Commit cf1ce63a authored by Tamara Hodgetts's avatar Tamara Hodgetts
Browse files

Corrected versioning bam_stats_samtools

parent 76e99709
Loading
Loading
Loading
Loading
+8 −1
Original line number Diff line number Diff line
@@ -13,13 +13,20 @@ workflow BAM_STATS_SAMTOOLS {
    ch_bam_bai // channel: [ val(meta), [ bam ], [bai] ]

    main:
    ch_versions = Channel.empty()

    SAMTOOLS_STATS    ( ch_bam_bai )
    ch_versions = ch_versions.mix(SAMTOOLS_STATS.out.versions)

    SAMTOOLS_FLAGSTAT ( ch_bam_bai )
    ch_versions = ch_versions.mix(SAMTOOLS_FLAGSTAT.out.versions)

    SAMTOOLS_IDXSTATS ( ch_bam_bai )
    ch_versions = ch_versions.mix(SAMTOOLS_IDXSTATS.out.versions)

    emit:
    stats    = SAMTOOLS_STATS.out.stats       // channel: [ val(meta), [ stats ] ]
    flagstat = SAMTOOLS_FLAGSTAT.out.flagstat // channel: [ val(meta), [ flagstat ] ]
    idxstats = SAMTOOLS_IDXSTATS.out.idxstats // channel: [ val(meta), [ idxstats ] ]
    versions = SAMTOOLS_STATS.out.versions    // path: *.version.txt
    versions = ch_versions                    // channel: [ versions.yml ]
}