Loading tests/test_verify_output_skip_reporting.yml +16 −16 Original line number Diff line number Diff line Loading @@ -5,13 +5,13 @@ - verify_output_reporting - verify_output_reporting_skip_reporting files: - path: results/06_reporting/qc/merged_report.pdf - path: results/04_reporting/qc/merged_report.pdf should_exist: false - path: results/06_reporting/multiqc/multiqc_report.html - path: results/04_reporting/multiqc/multiqc_report.html should_exist: false - path: results/06_reporting/heatmaps/peaks/h3k27me3_R1.plotHeatmap.pdf - path: results/04_reporting/heatmaps/peaks/h3k27me3_R1.plotHeatmap.pdf should_exist: false - path: results/06_reporting/heatmaps/igv/igv_session.xml - path: results/04_reporting/heatmaps/igv/igv_session.xml should_exist: false - name: test_verify_output_skip_reporting_igv Loading @@ -21,10 +21,10 @@ - verify_output_reporting - verify_output_reporting_skip_igv files: - path: results/06_reporting/qc/merged_report.pdf - path: results/06_reporting/multiqc/multiqc_report.html - path: results/06_reporting/heatmaps/peaks/h3k27me3_R1.plotHeatmap.pdf - path: results/06_reporting/heatmaps/igv/igv_session.xml - path: results/04_reporting/qc/merged_report.pdf - path: results/04_reporting/multiqc/multiqc_report.html - path: results/04_reporting/heatmaps/peaks/h3k27me3_R1.plotHeatmap.pdf - path: results/04_reporting/heatmaps/igv/igv_session.xml should_exist: false - name: test_verify_output_skip_reporting_heatmaps Loading @@ -34,11 +34,11 @@ - verify_output_reporting - verify_output_reporting_skip_heatmaps files: - path: results/06_reporting/qc/merged_report.pdf - path: results/06_reporting/multiqc/multiqc_report.html - path: results/06_reporting/heatmaps/peaks/h3k27me3_R1.plotHeatmap.pdf - path: results/04_reporting/qc/merged_report.pdf - path: results/04_reporting/multiqc/multiqc_report.html - path: results/04_reporting/heatmaps/peaks/h3k27me3_R1.plotHeatmap.pdf should_exist: false - path: results/06_reporting/heatmaps/igv/igv_session.xml - path: results/04_reporting/heatmaps/igv/igv_session.xml - name: test_verify_output_skip_reporting_multiqc command: nextflow run main.nf -profile docker,test --skip_fastqc true --skip_multiqc true Loading @@ -47,8 +47,8 @@ - verify_output_reporting - verify_output_reporting_skip_multiqc files: - path: results/06_reporting/qc/merged_report.pdf - path: results/06_reporting/multiqc/multiqc_report.html - path: results/04_reporting/qc/merged_report.pdf - path: results/04_reporting/multiqc/multiqc_report.html should_exist: false - path: results/06_reporting/heatmaps/peaks/h3k27me3_R1.plotHeatmap.pdf - path: results/06_reporting/heatmaps/igv/igv_session.xml No newline at end of file - path: results/04_reporting/heatmaps/peaks/h3k27me3_R1.plotHeatmap.pdf - path: results/04_reporting/heatmaps/igv/igv_session.xml No newline at end of file Loading
tests/test_verify_output_skip_reporting.yml +16 −16 Original line number Diff line number Diff line Loading @@ -5,13 +5,13 @@ - verify_output_reporting - verify_output_reporting_skip_reporting files: - path: results/06_reporting/qc/merged_report.pdf - path: results/04_reporting/qc/merged_report.pdf should_exist: false - path: results/06_reporting/multiqc/multiqc_report.html - path: results/04_reporting/multiqc/multiqc_report.html should_exist: false - path: results/06_reporting/heatmaps/peaks/h3k27me3_R1.plotHeatmap.pdf - path: results/04_reporting/heatmaps/peaks/h3k27me3_R1.plotHeatmap.pdf should_exist: false - path: results/06_reporting/heatmaps/igv/igv_session.xml - path: results/04_reporting/heatmaps/igv/igv_session.xml should_exist: false - name: test_verify_output_skip_reporting_igv Loading @@ -21,10 +21,10 @@ - verify_output_reporting - verify_output_reporting_skip_igv files: - path: results/06_reporting/qc/merged_report.pdf - path: results/06_reporting/multiqc/multiqc_report.html - path: results/06_reporting/heatmaps/peaks/h3k27me3_R1.plotHeatmap.pdf - path: results/06_reporting/heatmaps/igv/igv_session.xml - path: results/04_reporting/qc/merged_report.pdf - path: results/04_reporting/multiqc/multiqc_report.html - path: results/04_reporting/heatmaps/peaks/h3k27me3_R1.plotHeatmap.pdf - path: results/04_reporting/heatmaps/igv/igv_session.xml should_exist: false - name: test_verify_output_skip_reporting_heatmaps Loading @@ -34,11 +34,11 @@ - verify_output_reporting - verify_output_reporting_skip_heatmaps files: - path: results/06_reporting/qc/merged_report.pdf - path: results/06_reporting/multiqc/multiqc_report.html - path: results/06_reporting/heatmaps/peaks/h3k27me3_R1.plotHeatmap.pdf - path: results/04_reporting/qc/merged_report.pdf - path: results/04_reporting/multiqc/multiqc_report.html - path: results/04_reporting/heatmaps/peaks/h3k27me3_R1.plotHeatmap.pdf should_exist: false - path: results/06_reporting/heatmaps/igv/igv_session.xml - path: results/04_reporting/heatmaps/igv/igv_session.xml - name: test_verify_output_skip_reporting_multiqc command: nextflow run main.nf -profile docker,test --skip_fastqc true --skip_multiqc true Loading @@ -47,8 +47,8 @@ - verify_output_reporting - verify_output_reporting_skip_multiqc files: - path: results/06_reporting/qc/merged_report.pdf - path: results/06_reporting/multiqc/multiqc_report.html - path: results/04_reporting/qc/merged_report.pdf - path: results/04_reporting/multiqc/multiqc_report.html should_exist: false - path: results/06_reporting/heatmaps/peaks/h3k27me3_R1.plotHeatmap.pdf - path: results/06_reporting/heatmaps/igv/igv_session.xml No newline at end of file - path: results/04_reporting/heatmaps/peaks/h3k27me3_R1.plotHeatmap.pdf - path: results/04_reporting/heatmaps/igv/igv_session.xml No newline at end of file
