Merge pull request #129 from luslab/dev

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FROM nfcore/base:1.14

LABEL authors="chris.cheshire@crick.ac.uk" \

        description="Docker image containing all requirements for development of static reports"

# Install conda packages

COPY ./environment.yml /

RUN conda env create -f /environment.yml && conda clean -a

ENV PATH /opt/conda/envs/reporting/bin:$PATH

#!/bin/bash

docker build -f dev/docker/static_reports/Dockerfile -t luslab/cutandrun-dev-reporting:latest dev/docker/static_reports

# conda env create -f environment.yml

name: reporting

channels:

  - conda-forge

  - bioconda

  - defaults

dependencies:

  # python version

  - python=3.8.3

  # conda packages

  - numpy=1.20.*

  - pandas=1.2.*

  - seaborn=0.11.*

  - pyranges=0.0.96

  - pysam=0.16.0.1