Updated samtools custom view to 1.14 (ae97269e) · Commits · Chaos / Cutandrun

modules/local/samtools_custom_view.nf

+3 −3

Original line number	Diff line number	Diff line
		@@ -11,11 +11,11 @@ process SAMTOOLS_CUSTOMVIEW {
		mode: params.publish_dir_mode,
		saveAs: { filename -> saveFiles(filename:filename, options:params.options, publish_dir:getSoftwareName(task.process), publish_id:meta.id) }

		conda (params.enable_conda ? "bioconda::samtools=1.10" : null)
		conda (params.enable_conda ? "bioconda::samtools=1.14" : null)
		if (workflow.containerEngine == 'singularity' && !params.singularity_pull_docker_container) {
		container "https://depot.galaxyproject.org/singularity/samtools:1.10--h9402c20_2"
		container "https://depot.galaxyproject.org/singularity/samtools:1.14--h9402c20_2"
		} else {
		container "quay.io/biocontainers/samtools:1.10--h9402c20_2"
		container "quay.io/biocontainers/samtools:1.14--h9402c20_2"
		}

		input: