Commit a55aa68e authored by Chris Cheshire's avatar Chris Cheshire
Browse files

split align CI tests

parent e0f31a5c

.github/workflows/ci.yml

+1 −1
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@@ -76,7 +76,7 @@ jobs: 
      fail-fast: false

      matrix:

        nxf_version: ["21.04.0", '']

        tags: ["samplesheet", "verify_output_input", "verify_output_align", "verify_output_peak_calling", "verify_output_reporting", "verify_output_save", "verify_output_skip"]

        tags: ["samplesheet", "verify_output_input", "verify_output_align_short", "verify_output_align_long", "verify_output_peak_calling", "verify_output_reporting", "verify_output_save", "verify_output_skip"]

    steps:

      - uses: actions/checkout@v2

tests/test_verify_output_align_intermed.yml

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@@ -3,6 +3,7 @@ 
  tags:

    - verify_output

    - verify_output_align

    - verify_output_align_short

    - verify_output_align_intermed

  files:

    - path: results/02_alignment/bowtie2/target/intermed/align/h3k27me3_R1.target.sorted.bam

tests/test_verify_output_duplicates.yml

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@@ -3,6 +3,7 @@ 
  tags:

    - verify_output

    - verify_output_align

    - verify_output_align_long

    - verify_output_align_duplicates

    - verify_output_align_duplicates_mark

  files:

tests/test_verify_output_only_align.yml

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@@ -3,6 +3,7 @@ 
  tags:

    - verify_output

    - verify_output_align

    - verify_output_align_short

    - verify_output_align_only_align

  files:

    - path: results/02_alignment/bowtie2/target/h3k27me3_R1.target.sorted.bam

tests/test_verify_output_only_q_filter.yml

+1 −0
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@@ -3,6 +3,7 @@ 
  tags:

    - verify_output

    - verify_output_align

    - verify_output_align_short

    - verify_output_align_only_q_filter

  files:

    - path: results/02_alignment/bowtie2/target/h3k27me3_R1.target.filtered.bam

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