Consensus peak channel prep now filters out samples with only one rep (9d900d62) · Commits · Chaos / Cutandrun

workflows/cutandrun.nf

+16 −2

Original line number	Diff line number	Diff line
		@@ -712,8 +712,15 @@ workflow CUTANDRUN {
		new_meta.put( "id", "all_samples" )
		[ new_meta, row[1].flatten() ]
		}
		.map { row ->
		[ row[0], row[1], row[1].size() ]
		}
		.filter { row -> row[2] > 1 }
		.map { row ->
		[ row[0], row[1] ]
		}
		.set { ch_seacr_bed_all }
		// EXAMPLE CHANNEL STRUCT: [[id: all_samples], BED1, BED2, BEDn...]
		// EXAMPLE CHANNEL STRUCT: [[id: all_samples], [BED1, BED2, BEDn...], count]
		//ch_seacr_bed_all \| view

		/*
		@@ -736,8 +743,15 @@ workflow CUTANDRUN {
		new_meta.put( "id", row[0] )
		[ new_meta, row[1].flatten() ]
		}
		.map { row ->
		[ row[0], row[1], row[1].size() ]
		}
		.filter { row -> row[2] > 1 }
		.map { row ->
		[ row[0], row[1] ]
		}
		.set { ch_seacr_bed_group }
		// EXAMPLE CHANNEL STRUCT: [[id: <GROUP>], BED1, BED2, BEDn...]
		// EXAMPLE CHANNEL STRUCT: [[id: <GROUP>], [BED1, BED2, BEDn...], count]
		//ch_seacr_bed_group \| view

		/*