Commit 9c761bf5 authored by Tamara Hodgetts's avatar Tamara Hodgetts
Browse files

Pulled out is_control metadata and included channel view

parent c30b5819

subworkflows/local/input_check.nf

+1 −0
Original line number Diff line number Diff line
@@ -29,6 +29,7 @@ def get_samplesheet_paths(LinkedHashMap row) { 
    meta.replicate     = row.replicate.toInteger()

    meta.control_group = row.control_group

    meta.single_end    = row.single_end.toBoolean()

    meta.is_control    = row.is_control.toBoolean()



    def array = []

    if (!file(row.fastq_1).exists()) {

workflows/cutandrun.nf

+2 −0
Original line number Diff line number Diff line
@@ -201,6 +201,8 @@ workflow CUTANDRUN { 
            }

            .set { ch_fastq }

    }

    // 

    ch_fastq | view



    /*

     * MODULE: Concatenate FastQ files from same sample if required

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