Commit 9b7c2034 authored by Chris Cheshire's avatar Chris Cheshire
Browse files

Updated fastqc

parent be7b4318
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+1 −1
Original line number Diff line number Diff line
@@ -29,7 +29,7 @@ process FASTQC {
    script:
    // Add soft-links to original FastQs for consistent naming in pipeline
    def software = getSoftwareName(task.process)
    def prefix   = options.suffix ? "${meta.id}.${options.suffix}" : "${meta.id}"
    def prefix   = options.suffix ? "${meta.id}${options.suffix}" : "${meta.id}"
    if (meta.single_end) {
        """
        [ ! -f  ${prefix}.fastq.gz ] && ln -s $reads ${prefix}.fastq.gz