Loading assets/samplesheet.csv +6 −6 Original line number Diff line number Diff line group,replicate,control_group,fastq_1,fastq_2 h3k27me3,1,1,READ1_FASTQ,READ2_FASTQC h3k27me3,2,1,READ1_FASTQ,READ2_FASTQC h3k4me3,1,2,READ1_FASTQ,READ2_FASTQC h3k4me3,2,2,READ1_FASTQ,READ2_FASTQC igg,1,1,READ1_FASTQ,READ2_FASTQC igg,2,2,READ1_FASTQ,READ2_FASTQC h3k27me3,1,1,READ1_FASTQ.gz,READ2_FASTQ.gz h3k27me3,2,1,READ1_FASTQ.gz,READ2_FASTQ.gz h3k4me3,1,2,READ1_FASTQ.gz,READ2_FASTQ.gz h3k4me3,2,2,READ1_FASTQ.gz,READ2_FASTQ.gz igg,1,1,READ1_FASTQ.gz,READ2_FASTQ.gz igg,2,2,READ1_FASTQ.gz,READ2_FASTQ.gz docs/usage.md +6 −6 Original line number Diff line number Diff line Loading @@ -16,12 +16,12 @@ An example sample sheet structure is shown below. This defines two target experi ```bash group,replicate,control_group,fastq_1,fastq_2 h3k27me3,1,1,H3K27ME3_S1_L001_R1.fastq.gz,H3K27ME3_S1_L001_R2.fastq.gz h3k27me3,2,1,H3K27ME3_S2_L001_R1.fastq.gz,H3K27ME3_S2_L001_R2.fastq.gz h3k4me3,1,2,H3K4ME3_S1_L001_R1.fastq.gz,H3K4ME3_S1_L001_R2.fastq.gz h3k4me3,2,2,H3K4ME3_S2_L001_R1.fastq.gz,H3K4MES_S2_L001_R2.fastq.gz igg,1,1,IGG_S1_L001_R1.fastq.gz,IGG_S1_L001_R2.fastq.gz igg,2,2,IGG_S2_L001_R1.fastq.gz,IGG_S2_L001_R2.fastq.gz h3k27me3,1,1,READ1_FASTQ.gz,READ2_FASTQ.gz h3k27me3,2,1,READ1_FASTQ.gz,READ2_FASTQ.gz h3k4me3,1,2,READ1_FASTQ.gz,READ2_FASTQ.gz h3k4me3,2,2,READ1_FASTQ.gz,READ2_FASTQ.gz igg,1,1,READ1_FASTQ.gz,READ2_FASTQ.gz igg,2,2,READ1_FASTQ.gz,READ2_FASTQ.gz ``` | Column | Description | Loading Loading
assets/samplesheet.csv +6 −6 Original line number Diff line number Diff line group,replicate,control_group,fastq_1,fastq_2 h3k27me3,1,1,READ1_FASTQ,READ2_FASTQC h3k27me3,2,1,READ1_FASTQ,READ2_FASTQC h3k4me3,1,2,READ1_FASTQ,READ2_FASTQC h3k4me3,2,2,READ1_FASTQ,READ2_FASTQC igg,1,1,READ1_FASTQ,READ2_FASTQC igg,2,2,READ1_FASTQ,READ2_FASTQC h3k27me3,1,1,READ1_FASTQ.gz,READ2_FASTQ.gz h3k27me3,2,1,READ1_FASTQ.gz,READ2_FASTQ.gz h3k4me3,1,2,READ1_FASTQ.gz,READ2_FASTQ.gz h3k4me3,2,2,READ1_FASTQ.gz,READ2_FASTQ.gz igg,1,1,READ1_FASTQ.gz,READ2_FASTQ.gz igg,2,2,READ1_FASTQ.gz,READ2_FASTQ.gz
docs/usage.md +6 −6 Original line number Diff line number Diff line Loading @@ -16,12 +16,12 @@ An example sample sheet structure is shown below. This defines two target experi ```bash group,replicate,control_group,fastq_1,fastq_2 h3k27me3,1,1,H3K27ME3_S1_L001_R1.fastq.gz,H3K27ME3_S1_L001_R2.fastq.gz h3k27me3,2,1,H3K27ME3_S2_L001_R1.fastq.gz,H3K27ME3_S2_L001_R2.fastq.gz h3k4me3,1,2,H3K4ME3_S1_L001_R1.fastq.gz,H3K4ME3_S1_L001_R2.fastq.gz h3k4me3,2,2,H3K4ME3_S2_L001_R1.fastq.gz,H3K4MES_S2_L001_R2.fastq.gz igg,1,1,IGG_S1_L001_R1.fastq.gz,IGG_S1_L001_R2.fastq.gz igg,2,2,IGG_S2_L001_R1.fastq.gz,IGG_S2_L001_R2.fastq.gz h3k27me3,1,1,READ1_FASTQ.gz,READ2_FASTQ.gz h3k27me3,2,1,READ1_FASTQ.gz,READ2_FASTQ.gz h3k4me3,1,2,READ1_FASTQ.gz,READ2_FASTQ.gz h3k4me3,2,2,READ1_FASTQ.gz,READ2_FASTQ.gz igg,1,1,READ1_FASTQ.gz,READ2_FASTQ.gz igg,2,2,READ1_FASTQ.gz,READ2_FASTQ.gz ``` | Column | Description | Loading
