Updated samtools in get_chrom_sizes (8faf4763) · Commits · Chaos / Cutandrun

modules/local/get_chrom_sizes.nf

+3 −3

Original line number	Diff line number	Diff line
		@@ -14,11 +14,11 @@ process GET_CHROM_SIZES {
		mode: params.publish_dir_mode,
		saveAs: { filename -> saveFiles(filename:filename, options:params.options, publish_dir:"genome", publish_id:'') }

		conda (params.enable_conda ? "bioconda::samtools=1.13" : null)
		conda (params.enable_conda ? "bioconda::samtools=1.14" : null)
		if (workflow.containerEngine == 'singularity' && !params.singularity_pull_docker_container) {
		container "https://depot.galaxyproject.org/singularity/samtools:1.13--h8c37831_0"
		container "https://depot.galaxyproject.org/singularity/samtools:1.14--h8c37831_0"
		} else {
		container "quay.io/biocontainers/samtools:1.13--h8c37831_0"
		container "quay.io/biocontainers/samtools:1.14--h8c37831_0"
		}

		input: