Updated test run names

    test_fasta_only           { includeConfig "conf/test_fasta_only.config"           } // Runs a single sample with an IgG control but with no extra genome files just as bed files and black lists

    test_tech_reps            { includeConfig "conf/test_tech_reps.config"            } // Runs a single sample with two technical replicates and an IgG control

    test_full_small           { includeConfig "conf/test_full_small.config"           } // Runs a full experimental configuration but with a small dataset

    test_no_igg               { includeConfig "conf/test_no_igg.config"               } // Runs a single sample with NO IgG control

    test_no_control           { includeConfig "conf/test_no_control.config"           } // Runs a single sample with NO IgG control

    test_full                 { includeConfig "conf/test_full.config"                 } // Runs a full experimental dataset

    test_full_multi           { includeConfig "conf/test_full_multi.config"           } // Runs a full experimental dataset with extra fake replicates to enable full reporting functionality

    test_local_zip            { includeConfig "conf/test_local_zip.config"            } // Runs a single sample with an IgG control but that targets local, already downloaded compressed input files

    - path: results/03_peak_calling/04_called_peaks/h3k27me3_R1.macs2.peaks.bed_summits.bed

- name: test_peak_callers_seacr_macs2_noigg

  command: nextflow run main.nf -profile docker,test_no_igg --only_peak_calling true --skip_fastqc true --skip_removeduplicates true --peakcaller seacr,macs2 -c tests/config/nextflow.config

  command: nextflow run main.nf -profile docker,test_no_control --only_peak_calling true --skip_fastqc true --skip_removeduplicates true --peakcaller seacr,macs2 -c tests/config/nextflow.config

  tags:

    - test_peak_callers

    - test_peak_callers_seacr_macs2_noigg