Merge pull request #45 from luslab/dev (7509c341) · Commits · Chaos / Cutandrun

.github/workflows/ci.yml

+25 −0

Original line number	Diff line number	Diff line
		@@ -63,6 +63,31 @@ jobs:
		- name: Run pipeline with test data
		run: \|
		nextflow run ${GITHUB_WORKSPACE} -profile docker,test_full_small
		#####################################
		### EDGE VERSION INTEGRATION TEST ###
		#####################################
		test_edge:
		name: Run standard pipeline test (edge version)
		# Only run on push if this is the nf-core dev branch (merged PRs)
		if: ${{ github.event_name != 'push' \|\| (github.event_name == 'push' && github.repository == 'nf-core/cutandrun') }}
		runs-on: ubuntu-latest
		env:
		NXF_VER: ''
		NXF_EDGE: 1
		NXF_ANSI_LOG: false
		steps:
		- name: Check out pipeline code
		uses: actions/checkout@v2

		- name: Install Nextflow
		run: \|
		wget -qO- get.nextflow.io \| bash
		sudo mv nextflow /usr/local/bin/
		nextflow self-update

		- name: Run pipeline with test data
		run: \|
		nextflow run ${GITHUB_WORKSPACE} -profile docker,test
		##############################
		### UNIT TESTS ###
		##############################

+0 −2

Original line number	Diff line number	Diff line
		@@ -61,9 +61,7 @@ workflow NFCORE_CUTANDRUN {
		/*
		* WORKFLOW: Run main nf-core/cutandrun analysis pipeline
		*/

		CUTANDRUN ()

		}

		/*