Downgraded nextflow (6d24e05f) · Commits · Chaos / Cutandrun

.github/workflows/ci.yml

+3 −3

Original line number	Diff line number	Diff line
		@@ -23,7 +23,7 @@ jobs:
		strategy:
		matrix:
		# Nextflow versions: check pipeline minimum and current latest
		nxf_ver: ['21.04.3', '']
		nxf_ver: ['21.04.0', '']
		steps:
		- name: Check out pipeline code
		uses: actions/checkout@v2
		@@ -62,7 +62,7 @@ jobs:
		strategy:
		matrix:
		# We only run this on the specified nextflow version for the pipeline
		nxf_ver: ['21.04.3']
		nxf_ver: ['21.04.0']
		steps:
		- name: Check out pipeline code
		uses: actions/checkout@v2
		@@ -136,7 +136,7 @@ jobs:
		strategy:
		fail-fast: false
		matrix:
		nxf_version: ["21.04.3"]
		nxf_version: ["21.04.0"]
		tags: ["samplesheet", "verify_output_input", "verify_output_align_short", "verify_output_align_long", "verify_output_peak_calling", "verify_output_reporting", "verify_output_save", "verify_output_skip"]
		steps:
		- uses: actions/checkout@v2

README.md

+2 −2

Original line number	Diff line number	Diff line
		@@ -5,7 +5,7 @@
		[![AWS CI](https://img.shields.io/badge/CI%20tests-full%20size-FF9900?labelColor=000000&logo=Amazon%20AWS)](https://nf-co.re/cutandrun/results)
		[![Cite with Zenodo](http://img.shields.io/badge/DOI-10.5281/zenodo.XXXXXXX-1073c8?labelColor=000000)](https://doi.org/10.5281/zenodo.XXXXXXX)

		[![Nextflow](https://img.shields.io/badge/nextflow%20DSL2-%E2%89%A521.04.3-23aa62.svg?labelColor=000000)](https://www.nextflow.io/)
		[![Nextflow](https://img.shields.io/badge/nextflow%20DSL2-%E2%89%A521.04.0-23aa62.svg?labelColor=000000)](https://www.nextflow.io/)
		[![run with conda](http://img.shields.io/badge/run%20with-conda-3EB049?labelColor=000000&logo=anaconda)](https://docs.conda.io/en/latest/)
		[![run with docker](https://img.shields.io/badge/run%20with-docker-0db7ed?labelColor=000000&logo=docker)](https://www.docker.com/)
		[![run with singularity](https://img.shields.io/badge/run%20with-singularity-1d355c.svg?labelColor=000000)](https://sylabs.io/docs/)
		@@ -43,7 +43,7 @@ The pipeline has been developed with continuous integration (CI) in mind. nf-cor

		## Quick Start

		1. Install [`Nextflow`](https://www.nextflow.io/docs/latest/getstarted.html#installation) (`>=21.04.3`)
		1. Install [`Nextflow`](https://www.nextflow.io/docs/latest/getstarted.html#installation) (`>=21.04.0`)

		2. Install any of [`Docker`](https://docs.docker.com/engine/installation/), [`Singularity`](https://www.sylabs.io/guides/3.0/user-guide/), [`Podman`](https://podman.io/), [`Shifter`](https://nersc.gitlab.io/development/shifter/how-to-use/) or [`Charliecloud`](https://hpc.github.io/charliecloud/) for full pipeline reproducibility _(please only use [`Conda`](https://conda.io/miniconda.html) as a last resort; see [docs](https://nf-co.re/usage/configuration#basic-configuration-profiles))_

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