Syntax fix (6bb80ffc) · Commits · Chaos / Cutandrun

subworkflows/nf-core/prepare_peakcalling.nf

+1 −1

Original line number	Diff line number	Diff line
		@@ -98,7 +98,7 @@ workflow PREPARE_PEAKCALLING {
		* CHANNEL: Split files based on igg or not
		*/
		ch_bam_bai.branch { it ->
		target: it[0].is_control != 1
		target: it[0].is_control == 0
		control: it[0].is_control == 1
		}
		.set { ch_bam_bai_split }

+4 −4

Original line number	Diff line number	Diff line
		@@ -411,7 +411,7 @@ workflow CUTANDRUN {
		* CHANNEL: Separate bedgraphs into target/control
		*/
		ch_bedgraph.branch { it ->
		target: it[0].is_control != 1
		target: it[0].is_control == 0
		control: it[0].is_control == 1
		}
		.set { ch_bedgraph_split }
		@@ -465,7 +465,7 @@ workflow CUTANDRUN {

		if('macs2' in callers) {
		ch_samtools_bam.branch{ it ->
		target: it[0].is_control != 1
		target: it[0].is_control == 0
		control: it[0].is_control == 1
		}
		.set { ch_samtools_bam_split }
		@@ -532,7 +532,7 @@ workflow CUTANDRUN {

		if('macs2' in callers) {
		ch_samtools_bam.branch{ it ->
		target: it[0].is_control != 1
		target: it[0].is_control == 0
		control: it[0].is_control == 1
		}
		.set { ch_samtools_bam_split }
		@@ -724,7 +724,7 @@ workflow CUTANDRUN {
		* CHANNEL: Remove IgG from bigwig channel
		*/
		ch_bigwig
		.filter { it[0].is_control != 1 }
		.filter { it[0].is_control == 0 }
		.set { ch_bigwig_no_igg }
		//ch_bigwig_no_igg \| view