Commit 638f86f6 authored by Chris Cheshire's avatar Chris Cheshire
Browse files

Updated bug where if you didnt specify a spike-in genome, the human bowtie2 index would be chosen

parent 645d77d7

main.nf

+2 −3
Original line number Diff line number Diff line
@@ -35,11 +35,10 @@ params.blacklist = WorkflowMain.getGenomeAttribute(params, 'blacklist') 
*/



if (!params.spikein_fasta) {

    params.spikein_bowtie2   = WorkflowMain.getGenomeAttribute(params, 'bowtie2')

    params.spikein_bowtie2 = WorkflowMain.getGenomeAttributeSpikeIn(params, 'bowtie2')

} else {

    params.spikein_bowtie2 = null

}



params.spikein_fasta   = WorkflowMain.getGenomeAttributeSpikeIn(params, 'fasta')



/*

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