more efficient array access from use of rsplit function (5e0266f5) · Commits · Chaos / Cutandrun

bin/lib/reports.py

+4 −4

Original line number	Diff line number	Diff line
		@@ -71,8 +71,8 @@ class Reports:
		frag_base_i = os.path.basename(dt_frag_list[i])
		sample_id = frag_base_i.split(".")[0]
		sample_id_split = sample_id.rsplit("_", 1)
		rep_i = sample_id_split[len(sample_id_split)-1]
		group_i ="_".join(sample_id_split[0:(len(sample_id_split)-1)])
		rep_i = sample_id_split[1]
		group_i = sample_id_split[0]

		# create long forms of fragment histograms
		dt_frag_i_long = np.repeat(dt_frag_i['Size'].values, dt_frag_i['Occurrences'].values)
		@@ -134,8 +134,8 @@ class Reports:
		bed_base_i = os.path.basename(seacr_bed_list[i])
		sample_id = bed_base_i.split(".")[0]
		sample_id_split = sample_id.rsplit("_", 1)
		rep_i = sample_id_split[len(sample_id_split)-1]
		group_i ="_".join(sample_id_split[0:(len(sample_id_split)-1)])
		rep_i = sample_id_split[1]
		group_i = sample_id_split[0]
		seacr_bed_i['group'] = np.repeat(group_i, seacr_bed_i.shape[0])
		seacr_bed_i['replicate'] = np.repeat(rep_i, seacr_bed_i.shape[0])