Merge branch 'chris-dev' into dev (56579436) · Commits · Chaos / Cutandrun

.github/workflows/ci.yml

+12 −7

Original line number	Diff line number	Diff line
		@@ -10,7 +10,7 @@ on:

		jobs:
		test:
		name: Run workflow tests
		name: Run standard pipeline test
		# Only run on push if this is the nf-core dev branch (merged PRs)
		if: ${{ github.event_name != 'push' \|\| (github.event_name == 'push' && github.repository == 'nf-core/cutandrun') }}
		runs-on: ubuntu-latest
		@@ -33,14 +33,19 @@ jobs:
		- name: Run pipeline with test data
		run: \|
		nextflow run ${GITHUB_WORKSPACE} -profile test,docker

		sra_download:
		name: Test downloading of public data
		if: ${{ github.event_name != 'push' \|\| (github.event_name == 'push' && github.repository == 'nf-core/rnaseq') }}
		# ---------------------------------------------------------------------
		test_no_igg:
		name: Run pipeline test with no IgG
		# Only run on push if this is the nf-core dev branch (merged PRs)
		if: ${{ github.event_name != 'push' \|\| (github.event_name == 'push' && github.repository == 'nf-core/cutandrun') }}
		runs-on: ubuntu-latest
		env:
		NXF_VER: ${{ matrix.nxf_ver }}
		NXF_ANSI_LOG: false
		strategy:
		matrix:
		# Nextflow versions: check pipeline minimum and current latest
		nxf_ver: ["21.04.0", ""]
		steps:
		- name: Check out pipeline code
		uses: actions/checkout@v2
		@@ -50,6 +55,6 @@ jobs:
		wget -qO- get.nextflow.io \| bash
		sudo mv nextflow /usr/local/bin/

		- name: Run pipeline to download public data
		- name: Run pipeline with test data
		run: \|
		nextflow run ${GITHUB_WORKSPACE} -profile test_sra,docker
		nextflow run ${GITHUB_WORKSPACE} -profile test_no_igg,docker
		No newline at end of file

+4 −4

File changed.

Contains only whitespace changes.