Commit 542f814c authored by Chris Cheshire's avatar Chris Cheshire
Browse files

Updated nextflow versions

parent 18f497dc

.github/workflows/ci.yml

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@@ -23,7 +23,7 @@ jobs: 
    strategy:

      matrix:

        # Nextflow versions: check pipeline minimum and current latest

        nxf_ver: ['21.04.0', '']

        nxf_ver: ['21.04.3', '']

    steps:

      - name: Check out pipeline code

        uses: actions/checkout@v2

README.md

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@@ -5,7 +5,7 @@ 
[![AWS CI](https://img.shields.io/badge/CI%20tests-full%20size-FF9900?labelColor=000000&logo=Amazon%20AWS)](https://nf-co.re/cutandrun/results)

[![Cite with Zenodo](http://img.shields.io/badge/DOI-10.5281/zenodo.XXXXXXX-1073c8?labelColor=000000)](https://doi.org/10.5281/zenodo.XXXXXXX)



[![Nextflow](https://img.shields.io/badge/nextflow%20DSL2-%E2%89%A521.04.0-23aa62.svg?labelColor=000000)](https://www.nextflow.io/)

[![Nextflow](https://img.shields.io/badge/nextflow%20DSL2-%E2%89%A521.04.3-23aa62.svg?labelColor=000000)](https://www.nextflow.io/)

[![run with conda](http://img.shields.io/badge/run%20with-conda-3EB049?labelColor=000000&logo=anaconda)](https://docs.conda.io/en/latest/)

[![run with docker](https://img.shields.io/badge/run%20with-docker-0db7ed?labelColor=000000&logo=docker)](https://www.docker.com/)

[![run with singularity](https://img.shields.io/badge/run%20with-singularity-1d355c.svg?labelColor=000000)](https://sylabs.io/docs/)
@@ -43,7 +43,7 @@ The pipeline has been developed with continuous integration (CI) in mind. nf-cor 


## Quick Start



1. Install [`Nextflow`](https://www.nextflow.io/docs/latest/getstarted.html#installation) (`>=21.04.0`)

1. Install [`Nextflow`](https://www.nextflow.io/docs/latest/getstarted.html#installation) (`>=21.04.3`)



2. Install any of [`Docker`](https://docs.docker.com/engine/installation/), [`Singularity`](https://www.sylabs.io/guides/3.0/user-guide/), [`Podman`](https://podman.io/), [`Shifter`](https://nersc.gitlab.io/development/shifter/how-to-use/) or [`Charliecloud`](https://hpc.github.io/charliecloud/) for full pipeline reproducibility _(please only use [`Conda`](https://conda.io/miniconda.html) as a last resort; see [docs](https://nf-co.re/usage/configuration#basic-configuration-profiles))_

nextflow.config

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@@ -223,7 +223,7 @@ manifest { 
    homePage        = "https://github.com/nf-core/cutandrun"

    description     = "Analysis pipeline for CUT&RUN and CUT&TAG experiments that includes sequencing QC, spike-in normalisation, IgG control normalisation, peak calling and downstream peak analysis."

    mainScript      = "main.nf"

    nextflowVersion = "!>=21.04.0"

    nextflowVersion = '!>=21.04.3'

    version         = '1.0.0dev'

}

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