Loading nextflow.config +1 −0 Original line number Diff line number Diff line Loading @@ -19,6 +19,7 @@ params { // References genome = null spikein_genome = "K12-MG1655" gene_bed = null save_reference = false only_genome = false Loading tests/test_param_check.yml +1 −1 Original line number Diff line number Diff line - name: test_param_check_custom_genome_blacklist command: nextflow run main.nf -profile docker,test_fasta_only --only_input true --gtf https://raw.githubusercontent.com/nf-core/test-datasets/cutandrun/reference/genomes/hg38-chr20-genes.gtf.gz --blacklist ./assets/blacklists/GRCh37-blacklist.bed -c tests/config/nextflow.config command: nextflow run main.nf -profile docker,test_fasta_only --only_input true --gtf https://raw.githubusercontent.com/nf-core/test-datasets/cutandrun/reference/genomes/hg38-chr20-genes.gtf.gz --blacklist ./assets/blacklists/hg38-blacklist.bed -c tests/config/nextflow.config tags: - params - params_customgenome Loading Loading
nextflow.config +1 −0 Original line number Diff line number Diff line Loading @@ -19,6 +19,7 @@ params { // References genome = null spikein_genome = "K12-MG1655" gene_bed = null save_reference = false only_genome = false Loading
tests/test_param_check.yml +1 −1 Original line number Diff line number Diff line - name: test_param_check_custom_genome_blacklist command: nextflow run main.nf -profile docker,test_fasta_only --only_input true --gtf https://raw.githubusercontent.com/nf-core/test-datasets/cutandrun/reference/genomes/hg38-chr20-genes.gtf.gz --blacklist ./assets/blacklists/GRCh37-blacklist.bed -c tests/config/nextflow.config command: nextflow run main.nf -profile docker,test_fasta_only --only_input true --gtf https://raw.githubusercontent.com/nf-core/test-datasets/cutandrun/reference/genomes/hg38-chr20-genes.gtf.gz --blacklist ./assets/blacklists/hg38-blacklist.bed -c tests/config/nextflow.config tags: - params - params_customgenome Loading
