improved versioning trim galore (4aa1b405) · Commits · Chaos / Cutandrun

modules/local/modules/trimgalore/main.nf

+6 −4

Original line number	Diff line number	Diff line
		@@ -67,7 +67,8 @@ process TRIMGALORE {

		cat <<-END_VERSIONS > versions.yml
		${getProcessName(task.process)}:
		${getSoftwareName(task.process)}: \$(trim_galore --version 2>&1 \| sed 's/^.version //; s/Last.\$//')
		${getSoftwareName(task.process)}: \$(echo \$(trim_galore --version 2>&1) \| sed 's/^.version //; s/Last.\$//')
		cutadapt: \$(cutadapt --version)
		END_VERSIONS
		"""
		} else {
		@@ -88,7 +89,8 @@ process TRIMGALORE {

		cat <<-END_VERSIONS > versions.yml
		${getProcessName(task.process)}:
		${getSoftwareName(task.process)}: \$(trim_galore --version 2>&1 \| sed 's/^.version //; s/Last.\$//')
		${getSoftwareName(task.process)}: \$(echo \$(trim_galore --version 2>&1) \| sed 's/^.version //; s/Last.\$//')
		cutadapt: \$(cutadapt --version)
		END_VERSIONS

		mv ${meta.id}_1_val_1.fq.gz ${prefix_1}.fastq.gz