Commit 20237f6c authored by Chris Cheshire's avatar Chris Cheshire
Browse files

Fixed container versions

parent a0ae06d1

modules/local/get_chrom_sizes.nf

+2 −2
Original line number Diff line number Diff line
@@ -16,9 +16,9 @@ process GET_CHROM_SIZES { 


    conda (params.enable_conda ? "bioconda::samtools=1.14" : null)

    if (workflow.containerEngine == 'singularity' && !params.singularity_pull_docker_container) {

        container "https://depot.galaxyproject.org/singularity/samtools:1.14--h8c37831_0"

        container "https://depot.galaxyproject.org/singularity/samtools:1.14--hb421002_0"

    } else {

        container "quay.io/biocontainers/samtools:1.14--h8c37831_0"

        container "quay.io/biocontainers/samtools:1.14--hb421002_0"

    }



    input:

subworkflows/local/calculate_fragments.nf

+1 −1
Original line number Diff line number Diff line
@@ -25,7 +25,7 @@ workflow CALCULATE_FRAGMENTS { 
    /*

     * Filter BAM file

     */

    SAMTOOLS_VIEW ( bam )

    SAMTOOLS_VIEW ( bam, [] )

    ch_versions = ch_versions.mix(SAMTOOLS_VIEW.out.versions)



    /*

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