Added genome refs for full test (1e6c714b) · Commits · Chaos / Cutandrun

conf/test_full.config

+4 −4

Original line number	Diff line number	Diff line
		@@ -17,10 +17,10 @@ params {
		genome = 'GRCh38'
		input = 'https://raw.githubusercontent.com/nf-core/test-datasets/cutandrun/samplesheet/test-GSE145187-all.csv'

		// // Genome references
		// blacklist = "${projectDir}/assets/blacklists/hg38-blacklist.bed"
		// spikein_fasta = 'https://raw.githubusercontent.com/nf-core/test-datasets/cutandrun/reference/genomes/e_coli_U00096_3.fa.gz'
		// spikein_bowtie2 = 'https://raw.githubusercontent.com/nf-core/test-datasets/cutandrun/reference/genomes/e_coli_U00096_3.tar.gz'
		// Genome references
		blacklist = "${projectDir}/assets/blacklists/hg38-blacklist.bed"
		spikein_fasta = 'https://raw.githubusercontent.com/nf-core/test-datasets/cutandrun/reference/genomes/e_coli_U00096_3.fa.gz'
		spikein_bowtie2 = 'https://raw.githubusercontent.com/nf-core/test-datasets/cutandrun/reference/genomes/e_coli_U00096_3.tar.gz'

		minimum_alignment_q_score = 10
		}
		No newline at end of file