@@ -43,9 +43,11 @@ We thank Harshil Patel ([@drpatelh](https://github.com/drpatelh)) and everyone i
* Added pipeline diagram to [[README](https://github.com/nf-core/cutandrun/blob/master/README.md)]
* Added pipeline diagram to [[README](https://github.com/nf-core/cutandrun/blob/master/README.md)]
* Upgraded all modules (local and nf-core) to support the new versioning system
* Upgraded all modules (local and nf-core) to support the new versioning system
* The module `getchromsizes` was submitted to nf-core and moved from `local` to `nf-core`
* The module `getchromsizes` was submitted to nf-core and moved from `local` to `nf-core`
* Added support for GFF files in IGV session generation
*[[#57](https://github.com/nf-core/cutandrun/issues/57), [#66](https://github.com/nf-core/cutandrun/issues/66)] - Upgraded version reporting in multiqc to support both software version by module and unique software versions. This improves detection of multi-version software usage in the pipeline
*[[#57](https://github.com/nf-core/cutandrun/issues/57), [#66](https://github.com/nf-core/cutandrun/issues/66)] - Upgraded version reporting in multiqc to support both software version by module and unique software versions. This improves detection of multi-version software usage in the pipeline
*[[#54](https://github.com/nf-core/cutandrun/issues/54)] - Fixed pipeline error where dots in sample ids inside the sample sheet were not correctly handled
*[[#54](https://github.com/nf-core/cutandrun/issues/54)] - Fixed pipeline error where dots in sample ids inside the sample sheet were not correctly handled
*[[#75](https://github.com/nf-core/cutandrun/issues/75)] - Fixed error caused by emtpy peak files being passed to the `CALCULATE_FRIP` and `CALCULATE_PEAK_REPROD` python reporting modules
*[[#75](https://github.com/nf-core/cutandrun/issues/75)] - Fixed error caused by emtpy peak files being passed to the `CALCULATE_FRIP` and `CALCULATE_PEAK_REPROD` python reporting modules
*[[#83]](https://github.com/nf-core/cutandrun/issues/83) - Fixed error in violin chart generation with cast to int64
