Commit 18d0d76e authored by Tamara Hodgetts's avatar Tamara Hodgetts
Browse files

Removed macs_fdr parameter

parent a3d0ec56

nextflow.config

+0 −1
Original line number Diff line number Diff line
@@ -69,7 +69,6 @@ params { 
    only_peak_calling          = false



    // MACS2 Peak Calling

    macs_fdr                   = 0.05

    macs_pvalue                = 0.05 

    macs2_gsize                = 2.7e9

workflows/cutandrun.nf

+1 −1
Original line number Diff line number Diff line
@@ -266,7 +266,7 @@ else if(params.save_align_intermed) { 


// Peak caller options

macs2_callpeak_options      = modules["macs2"]

macs2_callpeak_options.args = macs2_callpeak_options.args + " -q " + params.macs_fdr + " -p " + params.macs_pvalue

macs2_callpeak_options.args = macs2_callpeak_options.args + " -p " + params.macs_pvalue



// Peak caller parameter

params.peakcaller = [:]

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