Template update for nf-core/tools version 2.0.1

          GITHUB_COMMENTS_URL: ${{ github.event.pull_request.comments_url }}

          GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}

          GITHUB_PR_COMMIT: ${{ github.event.pull_request.head.sha }}

        run: nf-core -l lint_log.txt lint ${GITHUB_WORKSPACE} --markdown lint_results.md

        run: nf-core -l lint_log.txt lint --dir ${GITHUB_WORKSPACE} --markdown lint_results.md

      - name: Save PR number

        if: ${{ always() }}