Moved unit test sample sheets to testdatasets and fixed some test errors (11dad3a2) · Commits · Chaos / Cutandrun

tests/data/samplesheets/multiple_sample_multiple_igg.csv

deleted100644 → 0

+0 −8

Original line number	Diff line number	Diff line
		group,replicate,control_group,fastq_1,fastq_2
		h3k27me3,1,1,https://raw.githubusercontent.com/luslab/test-datasets/cutandrun/testdata/GSE145187_10000/h3k27me3_rep1_r1.fastq.gz,https://raw.githubusercontent.com/luslab/test-datasets/cutandrun/testdata/GSE145187_10000/h3k27me3_rep1_r2.fastq.gz
		h3k27me3,2,1,https://raw.githubusercontent.com/luslab/test-datasets/cutandrun/testdata/GSE145187_10000/h3k27me3_rep1_r1.fastq.gz,https://raw.githubusercontent.com/luslab/test-datasets/cutandrun/testdata/GSE145187_10000/h3k27me3_rep1_r2.fastq.gz
		h3k27me3_2,1,2,https://raw.githubusercontent.com/luslab/test-datasets/cutandrun/testdata/GSE145187_10000/h3k27me3_rep1_r1.fastq.gz,https://raw.githubusercontent.com/luslab/test-datasets/cutandrun/testdata/GSE145187_10000/h3k27me3_rep1_r2.fastq.gz
		h3k27me3_2,2,2,https://raw.githubusercontent.com/luslab/test-datasets/cutandrun/testdata/GSE145187_10000/h3k27me3_rep1_r1.fastq.gz,https://raw.githubusercontent.com/luslab/test-datasets/cutandrun/testdata/GSE145187_10000/h3k27me3_rep1_r2.fastq.gz
		igg,1,1,https://raw.githubusercontent.com/luslab/test-datasets/cutandrun/testdata/GSE145187_10000/igg_rep1_r1.fastq.gz,https://raw.githubusercontent.com/luslab/test-datasets/cutandrun/testdata/GSE145187_10000/igg_rep1_r2.fastq.gz
		igg,2,2,https://raw.githubusercontent.com/luslab/test-datasets/cutandrun/testdata/GSE145187_10000/igg_rep1_r1.fastq.gz,https://raw.githubusercontent.com/luslab/test-datasets/cutandrun/testdata/GSE145187_10000/igg_rep1_r2.fastq.gz
		igg,3,3,https://raw.githubusercontent.com/luslab/test-datasets/cutandrun/testdata/GSE145187_10000/igg_rep1_r1.fastq.gz,https://raw.githubusercontent.com/luslab/test-datasets/cutandrun/testdata/GSE145187_10000/igg_rep1_r2.fastq.gz
		No newline at end of file

tests/data/samplesheets/multiple_sample_single_igg.csv

deleted100644 → 0

+0 −6

Original line number	Diff line number	Diff line
		group,replicate,control_group,fastq_1,fastq_2
		h3k27me3,1,1,https://raw.githubusercontent.com/luslab/test-datasets/cutandrun/testdata/GSE145187_10000/h3k27me3_rep1_r1.fastq.gz,https://raw.githubusercontent.com/luslab/test-datasets/cutandrun/testdata/GSE145187_10000/h3k27me3_rep1_r2.fastq.gz
		h3k27me3,2,1,https://raw.githubusercontent.com/luslab/test-datasets/cutandrun/testdata/GSE145187_10000/h3k27me3_rep1_r1.fastq.gz,https://raw.githubusercontent.com/luslab/test-datasets/cutandrun/testdata/GSE145187_10000/h3k27me3_rep1_r2.fastq.gz
		h3k27me3_2,1,1,https://raw.githubusercontent.com/luslab/test-datasets/cutandrun/testdata/GSE145187_10000/h3k27me3_rep1_r1.fastq.gz,https://raw.githubusercontent.com/luslab/test-datasets/cutandrun/testdata/GSE145187_10000/h3k27me3_rep1_r2.fastq.gz
		h3k27me3_2,2,1,https://raw.githubusercontent.com/luslab/test-datasets/cutandrun/testdata/GSE145187_10000/h3k27me3_rep1_r1.fastq.gz,https://raw.githubusercontent.com/luslab/test-datasets/cutandrun/testdata/GSE145187_10000/h3k27me3_rep1_r2.fastq.gz
		igg,1,1,https://raw.githubusercontent.com/luslab/test-datasets/cutandrun/testdata/GSE145187_10000/igg_rep1_r1.fastq.gz,https://raw.githubusercontent.com/luslab/test-datasets/cutandrun/testdata/GSE145187_10000/igg_rep1_r2.fastq.gz
		No newline at end of file

tests/data/samplesheets/no_igg.csv

deleted100644 → 0

+0 −2

group,replicate,control_group,fastq_1,fastq_2

h3k27me3,1,1,https://raw.githubusercontent.com/luslab/test-datasets/cutandrun/testdata/GSE145187_10000/h3k27me3_rep1_r1.fastq.gz,https://raw.githubusercontent.com/luslab/test-datasets/cutandrun/testdata/GSE145187_10000/h3k27me3_rep1_r2.fastq.gz

 No newline at end of file

tests/data/samplesheets/rep_id_start_1.csv

deleted100644 → 0

+0 −3

Original line number	Diff line number	Diff line
		group,replicate,control_group,fastq_1,fastq_2
		h3k27me3,1,1,https://raw.githubusercontent.com/luslab/test-datasets/cutandrun/testdata/GSE145187_10000/h3k27me3_rep1_r1.fastq.gz,https://raw.githubusercontent.com/luslab/test-datasets/cutandrun/testdata/GSE145187_10000/h3k27me3_rep1_r2.fastq.gz
		igg,2,2,https://raw.githubusercontent.com/luslab/test-datasets/cutandrun/testdata/GSE145187_10000/igg_rep1_r1.fastq.gz,https://raw.githubusercontent.com/luslab/test-datasets/cutandrun/testdata/GSE145187_10000/igg_rep1_r2.fastq.gz
		No newline at end of file

tests/data/samplesheets/single_sample_single_igg.csv

deleted100644 → 0

+0 −3

Original line number	Diff line number	Diff line
		group,replicate,control_group,fastq_1,fastq_2
		h3k27me3,1,1,https://raw.githubusercontent.com/luslab/test-datasets/cutandrun/testdata/GSE145187_10000/h3k27me3_rep1_r1.fastq.gz,https://raw.githubusercontent.com/luslab/test-datasets/cutandrun/testdata/GSE145187_10000/h3k27me3_rep1_r2.fastq.gz
		igg,1,1,https://raw.githubusercontent.com/luslab/test-datasets/cutandrun/testdata/GSE145187_10000/igg_rep1_r1.fastq.gz,https://raw.githubusercontent.com/luslab/test-datasets/cutandrun/testdata/GSE145187_10000/igg_rep1_r2.fastq.gz
		No newline at end of file

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