Loading R/gtf.R +5 −1 Original line number Diff line number Diff line Loading @@ -77,7 +77,11 @@ txdb <- function( GenomicFeatures::makeTxDbFromGFF( dataSource = base_name(gtf_file,"annotation.gtf") %>% gsub(".gz","",.), organism = organism, chrominfo = chr_size(ref = ref,mit = T)[,.(chrom = chr,length,genome = ref)] chrominfo = chr_size( ref = ref, mit = T, show_ref = T )[,.(chrom = chr,length,genome = name)] ) saveDb(txdb,txdb_file) Loading Loading
R/gtf.R +5 −1 Original line number Diff line number Diff line Loading @@ -77,7 +77,11 @@ txdb <- function( GenomicFeatures::makeTxDbFromGFF( dataSource = base_name(gtf_file,"annotation.gtf") %>% gsub(".gz","",.), organism = organism, chrominfo = chr_size(ref = ref,mit = T)[,.(chrom = chr,length,genome = ref)] chrominfo = chr_size( ref = ref, mit = T, show_ref = T )[,.(chrom = chr,length,genome = name)] ) saveDb(txdb,txdb_file) Loading
