Loading CPU/common/sam_to_mnd.sh +2 −1 Changes for CPU/common/sam_to_mnd.sh: 2 added lines, 1 removed line. Original line number Diff line number Diff line # How to create old style merged_nodups.txt for 3D-DNA # File should be dedupped SAM saamtools view -O SAM -F 1024 $1 | awk -v mnd=1 -f sam_to_pre.awk # NB: you should likely put the directory in from of the sam_to_pre.awk file samtools view -O SAM -F 1024 $1 | awk -v mnd=1 -f sam_to_pre.awk Loading
CPU/common/sam_to_mnd.sh +2 −1 Changes for CPU/common/sam_to_mnd.sh: 2 added lines, 1 removed line. Original line number Diff line number Diff line # How to create old style merged_nodups.txt for 3D-DNA # File should be dedupped SAM saamtools view -O SAM -F 1024 $1 | awk -v mnd=1 -f sam_to_pre.awk # NB: you should likely put the directory in from of the sam_to_pre.awk file samtools view -O SAM -F 1024 $1 | awk -v mnd=1 -f sam_to_pre.awk
