Loading SLURM/scripts/juicer.sh +2 −1 Changes for SLURM/scripts/juicer.sh: 2 added lines, 1 removed line. Original line number Diff line number Diff line Loading @@ -286,6 +286,7 @@ then chimeric) chimeric=1 ;; merge) merge=1 ;; dedup) dedup=1 ;; afterdedup) afterdedup=1 ;; early) earlyexit=1 ;; final) final=1 ;; postproc) postproc=1 ;; Loading Loading @@ -324,7 +325,7 @@ else fi ## Alignment checks; not necessary if later stages if [[ -z "$chimeric" && -z "$merge" && -z "$final" && -z "$dedup" && -z "$postproc" ]] if [[ -z "$chimeric" && -z "$merge" && -z "$final" && -z "$dedup" && -z "$postproc" && -z "$afterdedup" ]] then ## Check that refSeq exists if [ ! -e "$refSeq" ]; then Loading Loading
SLURM/scripts/juicer.sh +2 −1 Changes for SLURM/scripts/juicer.sh: 2 added lines, 1 removed line. Original line number Diff line number Diff line Loading @@ -286,6 +286,7 @@ then chimeric) chimeric=1 ;; merge) merge=1 ;; dedup) dedup=1 ;; afterdedup) afterdedup=1 ;; early) earlyexit=1 ;; final) final=1 ;; postproc) postproc=1 ;; Loading Loading @@ -324,7 +325,7 @@ else fi ## Alignment checks; not necessary if later stages if [[ -z "$chimeric" && -z "$merge" && -z "$final" && -z "$dedup" && -z "$postproc" ]] if [[ -z "$chimeric" && -z "$merge" && -z "$final" && -z "$dedup" && -z "$postproc" && -z "$afterdedup" ]] then ## Check that refSeq exists if [ ! -e "$refSeq" ]; then Loading
