Commit 3987ca4a authored by Chaos's avatar Chaos
Browse files

test

parent 2f3aaab0

hic_local.sh

+13 −12
Changes for hic_local.sh: 13 added lines, 12 removed lines.
Original line number Diff line number Diff line
@@ -2,6 +2,7 @@ source $1 


thread_str=$local_threads



ls *.fastq | wc -l

$pigz_cmd ${work_dir}/*.fastq



fastq_suffix=fastq.gz
@@ -182,18 +183,18 @@ do 
				$genome_size_file

	fi



#	if [ ! -e $rep_hic ];then

#		$hic_tools \

#			pre \

#				--threads $thread_str \

#				-s $rep_stat_txt \

#				-g $rep_stat_m \

#				-i $rep_dedup_index_txt \

#				-t $tmp_dir \

#				$rep_dedup_txt \

#				$rep_hic \

#				$genome_size_file

#	fi

	if [ ! -e $rep_hic ];then

		$hic_tools \

			pre \

				--threads $thread_str \

				-s $rep_stat_txt \

				-g $rep_stat_m \

				-i $rep_dedup_index_txt \

				-t $tmp_dir \

				$rep_dedup_txt \

				$rep_hic \

				$genome_size_file

	fi

done

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