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nchernia authored
* Added DNAse mode; specify the restriction site as "none" to enable * Added exclude fragment flag; use "-x" to run Juicer without creating fragment-delimited maps (this saves 8x space and a lot of time) * Collisions (more than two loci in one read) are now determined and outputted * Added another stage to relaunch at, and updated documentation to make this mode more clear * Added diploid Hi-C creation scripts * Added new flags for easier portability to LSF from AWS/OpenLava * Updated documentation; added version information to output
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