@@ -94,7 +94,7 @@ Here we provide information for:
- Generation of allele-specific vcf files from cell type bam files and patient genotype VCF files. We bypassed the qcfilterBam step in the createASVCF.sh script due to incompatibility with single cell bam files.
- Running RASQUAL for cell type peaks and variants within a 10 kb window.
## 5. bulk data process (bulk ATAC-seq, H3K27ac ChIP-seq)
## 5. bulk data process (bulk ATAC-seq, super enhancer analysis with H3K27ac ChIP-seq)
The cmd lines for processing bulk data can be found in 5_bulkDataAnalysis/bulkdata_process.sh. All the related scripts and configuration files can be found in the same folder.
