boards: Set nucleo_f429zi compatible with configuration guidelines

According to Default Configuration Guidelines, update nucleo_f429zi
- Add SPI_1, pinmux compatible with arduino spi
- Change PWM from PA0 to PE13 (Arduino D3)
- Disable I2C by default
- Update board dts with arduino connectors
- update board yaml file
- update board documentation

Signed-off-by: Erwan Gouriou <erwan.gouriou@linaro.org>