Commit ddd8391b authored by ZHENQIN WU's avatar ZHENQIN WU
Browse files

fix for benchmark script

parent e815db76
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+3 −3
Original line number Diff line number Diff line
@@ -74,10 +74,10 @@ def benchmark_loading_datasets(base_dir_o, hyper_parameters,
    raise ValueError('Dataset not supported')
                          
  if model in ['graphconv']:
    featurize = 'GraphConv'
    featurizer = 'GraphConv'
    n_features = 71
  elif model in ['tf','logreg','rf']:
    featurize = 'ECFP'
    featurizer = 'ECFP'
    n_features = 1024
  else:
    raise ValueError('Model not supported')
@@ -100,7 +100,7 @@ def benchmark_loading_datasets(base_dir_o, hyper_parameters,
    
    time_start = time.time()
    #loading datasets     
    tasks,datasets,transformers = loading_functions[dname](featurize=featurize)
    tasks,datasets,transformers = loading_functions[dname](featurizer=featurizer)
    train_dataset, valid_dataset, test_dataset = datasets
    time_finish_loading = time.time()
    #time_finish_loading-time_start is the time(s) used for dataset loading