Commit d6046f66 authored by leswing's avatar leswing
Browse files

Unify all CI and Readme to install via scripts/install_deepchem_conda.sh to install dependencies

parent 624e77c7
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@@ -14,16 +14,8 @@ install:
- conda config --set always_yes yes --set changeps1 no
- conda update -q conda
- conda config --add channels http://conda.binstar.org/omnia
- conda install pandas
- conda install -c rdkit rdkit
- conda install -c omnia boost=1.59.0
- conda install -c omnia openbabel
- conda install joblib
- conda install h5py
- pip install six
- conda install -c conda-forge protobuf=3.1.0
- conda install -c omnia mdtraj
- pip install tensorflow==0.12.1
- bash scripts/install_deepchem_conda.sh deepchem
- source activate deepchem
- pip install yapf==0.16.0
- python setup.py install
script:
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#!/usr/bin/env bash
envname=`cat /dev/urandom | tr -dc 'a-zA-Z0-9' | fold -w 16 | head -n 1`
conda create --name $envname python=3.5
bash scripts/install_deepchem_conda.sh $envname
source activate $envname
conda install -c omnia openbabel=2.4.0
conda install -c rdkit rdkit
conda install joblib
pip install six
conda install -c omnia mdtraj
conda install scikit-learn
conda install setuptools
conda install keras
conda install -c conda-forge protobuf=3.1.0
export TF_BINARY_URL=https://storage.googleapis.com/tensorflow/linux/gpu/tensorflow_gpu-0.12.1-cp35-cp35m-linux_x86_64.whl
pip install $TF_BINARY_URL
pip install nose
python setup.py install

rm examples/results.csv || true