🔧 fix travis.yml

[report]

omit =

    */python?.?/*

    */site-packages/nose/*

      language: c

      python: '3.7'

      os: windows

install:

- if [[ "$TRAVIS_OS_NAME" != "windows" ]]; then wget https://repo.continuum.io/miniconda/Miniconda3-latest-Linux-x86_64.sh

  -O miniconda.sh; export python_version=$TRAVIS_PYTHON_VERSION; bash miniconda.sh

  -b -p $HOME/miniconda; source "$HOME/miniconda/etc/profile.d/conda.sh"; fi

- if [[ "$TRAVIS_OS_NAME" == "windows" ]]; then choco install miniconda3 --params="'/JustMe

  /AddToPath:1'"; export PATH="/c/tools/miniconda3/:/c/tools/miniconda3/Scripts:/c/tools/miniconda3/Library/bin:$PATH";

  source /c/tools/miniconda3/etc/profile.d/conda.sh; fi

  - if [[ "$TRAVIS_OS_NAME" != "windows" ]]; then

    wget https://repo.continuum.io/miniconda/Miniconda3-latest-Linux-x86_64.sh -O miniconda.sh; 

    export python_version=$TRAVIS_PYTHON_VERSION;

    bash miniconda.sh -b -p $HOME/miniconda;

    source "$HOME/miniconda/etc/profile.d/conda.sh";

    fi

  - if [[ "$TRAVIS_OS_NAME" == "windows" ]]; then 

    choco install miniconda3 --params="'/JustMe /AddToPath:1'";

    export PATH="/c/tools/miniconda3/:/c/tools/miniconda3/Scripts:/c/tools/miniconda3/Library/bin:$PATH";

    source /c/tools/miniconda3/etc/profile.d/conda.sh;

    fi

  - hash -r

  - conda config --set always_yes yes --set changeps1 no

  - conda update -q conda

  - bash scripts/install_deepchem_conda.sh deepchem

  - conda activate deepchem

  - python setup.py install

- conda install mypy

- pip install coveralls yapf==0.22.0

  - pip install coveralls mypy yapf==0.22.0

script:

  - pytest -m "not slow" --cov=deepchem deepchem

- if [ $TRAVIS_PYTHON_VERSION == '3.7' ]; then

  find ./deepchem -name "*.py" ! -name '*load_dataset_template.py' | xargs python -m doctest -v; fi

- bash devtools/travis-ci/test_format_code.sh

  - bash devtools/run_doctest.sh

  - mypy -p deepchem --ignore-missing-imports

- if [ $TRAVIS_PYTHON_VERSION == '3.7' ]; then

  cd docs && pip install -r requirements.txt && make clean html && cd ..; fi

  - bash devtools/run_docs_build.sh

  - bash devtools/run_format_code.sh

after_success:

  - echo $TRAVIS_SECURE_ENV_VARS

  - coveralls

deploy:

  provider: pypi

  username: __token__

#!/bin/bash -e

if [ $TRAVIS_PYTHON_VERSION == '3.7' ]; then

    cd docs && pip install -r requirements.txt;

    make clean html && cd ..;

fi

#!/bin/bash -e

if [ $TRAVIS_PYTHON_VERSION == '3.7' ]; then

    find ./deepchem -name "*.py" ! -name '*load_dataset_template.py' | xargs python -m doctest -v;

fi

#!/bin/bash -e

CHANGED_FILES=`git diff --name-only $TRAVIS_COMMIT_RANGE | grep .py$ | grep -v contrib/`

exit_success () {

    echo "Passed Formatting Test"

    exit 0

}

if [ -z $CHANGED_FILES ]

then

    echo "No Python Files Changed"

    exit_success

fi

yapf -d $CHANGED_FILES > diff.txt

if [ -s diff.txt ]

then

    cat diff.txt

    echo ""

    echo "Failing Formatting Test"

    echo "Please run yapf over the files changed"

    echo "pip install yapf"

    echo "yapf -i $CHANGED_FILES"

    exit 1

else

    exit_success

fi

exit 1