update plotting script

      Results.add((line[0], line[1], line[3]))

  return Results

def run_benchmark(path):

def run_benchmark(path, deepchem_dir):

  finished = read_results(path)

  os.chdir(deepchem_dir)

  os.chdir('./examples')

  while len(TODO_list - finished) > 0:

    todo = TODO_list - finished

    for p in todo:

      os.system('python benchmark.py -seed 123 -d '+p[0]+' -s '+p[1]+' -m '+p[2])

      os.system('python benchmark.py --seed 123 -d '+p[0]+' -s '+p[1]+' -m '+p[2])

def plot(dataset, split, path, out_path):

    ax.get_children()[i].set_color(colors[i])

    ax.text(values[i]-0.1, y_pos[i]+0.1, str("%.3f" % values[i]), color='white')

  fig.savefig(os.path.join(out_path, dataset+'_'+split+'.png'))

  plt.show()

  #plt.show()

if __name__ == '__main__':

  FILE = '/home/zqwu/deepchem/examples/results.csv'

  run_benchmark(FILE)

  current_dir = os.path.dirname(os.path.realpath(__file__))

  DEEPCHEM_DIR = os.path.split(os.path.split(current_dir)[0])[0]

  FILE = os.path.join(os.path.join(DEEPCHEM_DIR, 'examples'), 'results.csv')

  run_benchmark(FILE, DEEPCHEM_DIR)

  for pair in TODO.keys():

    plot(pair[0], pair[1], FILE, os.environ['DEEPCHEM_DATA_DIR'])

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