Loading deepchem/data/data_loader.py +1 −3 Original line number Diff line number Diff line Loading @@ -875,7 +875,7 @@ class FASTALoader(DataLoader): learning tasks. """ def __init__(self, featurizer = OneHotFeaturizer, charset: str = "ATCGN"): def __init__(self, featurizer = OneHotFeaturizer, charset: str = "ATCGN", max_length = 58): """Initialize FASTALoader. Parameters Loading @@ -902,12 +902,10 @@ class FASTALoader(DataLoader): 'B', 'D', 'H', 'V', 'N', '-'), "ATCGN": ('A', 'T', 'C', 'G', 'N') } try: self.charset = charsets[charset] except: logger.exception("charset is invalid. charset must be 'protein', 'nucleic', or 'ATCGN'.") max_length = len(self.charset) # TODO: Figure out how to set max length self.user_specified_features = None if isinstance(featurizer, UserDefinedFeaturizer): Loading Loading
deepchem/data/data_loader.py +1 −3 Original line number Diff line number Diff line Loading @@ -875,7 +875,7 @@ class FASTALoader(DataLoader): learning tasks. """ def __init__(self, featurizer = OneHotFeaturizer, charset: str = "ATCGN"): def __init__(self, featurizer = OneHotFeaturizer, charset: str = "ATCGN", max_length = 58): """Initialize FASTALoader. Parameters Loading @@ -902,12 +902,10 @@ class FASTALoader(DataLoader): 'B', 'D', 'H', 'V', 'N', '-'), "ATCGN": ('A', 'T', 'C', 'G', 'N') } try: self.charset = charsets[charset] except: logger.exception("charset is invalid. charset must be 'protein', 'nucleic', or 'ATCGN'.") max_length = len(self.charset) # TODO: Figure out how to set max length self.user_specified_features = None if isinstance(featurizer, UserDefinedFeaturizer): Loading
