Unverified Commit a834e726 authored by Peter Eastman's avatar Peter Eastman Committed by GitHub
Browse files

Run all tests even if some fail (#2461) 

* Run all tests even if some fail

* Try using continue-on-error instead

* Another attempt at continuing to run tests after a failure

* Make tests depend on install rather than previous tests
parent e613643b

.github/workflows/main.yml

+10 −3
Original line number Diff line number Diff line
@@ -117,9 +117,11 @@ jobs: 
        python-version: ${{ matrix.python-version }}

        environment-file: env.yml

    - name: Install DeepChem

      id: install

      shell: bash -l {0}

      run: pip install -e .

    - name: Yapf (version 0.22.0)

      id: yapf

      # on Windows, yapf raise the strange error..., so ignore

      if: runner.os == 'Linux' || runner.os == 'macOS'

      shell: bash -l {0}
@@ -129,18 +131,23 @@ jobs: 
          yapf -d $CHANGED_FILES

        fi

    - name: Flake8

      if: ${{ (success() || failure()) && (steps.install.outcome == 'failure' || steps.install.outcome == 'success') }}

      shell: bash -l {0}

      run: source scripts/flake8_for_ci.sh

    - name: Mypy

      if: ${{ (success() || failure()) && (steps.install.outcome == 'failure' || steps.install.outcome == 'success') }}

      shell: bash -l {0}

      run: mypy -p deepchem

    - name: Doctest

      if: ${{ (success() || failure()) && (steps.install.outcome == 'failure' || steps.install.outcome == 'success') }}

      shell: bash -l {0}

      run: DGLBACKEND=pytorch pytest -v --ignore-glob='deepchem/**/test*.py' --doctest-modules deepchem

    - name: PyTest

      if: ${{ (success() || failure()) && (steps.install.outcome == 'failure' || steps.install.outcome == 'success') }}

      shell: bash -l {0}

      run: pytest -v -m "not slow" --cov=deepchem --cov-report=xml deepchem

    - name: Upload coverage to Codecov

      if: ${{ (success() || failure()) && (steps.install.outcome == 'failure' || steps.install.outcome == 'success') }}

      uses: codecov/codecov-action@v1

      with:

        file: ./coverage.xml

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