Commit 8f965bb8 authored by nd-02110114's avatar nd-02110114
Browse files

📝 uupdate docs

parent f0684ecb
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@@ -162,30 +162,35 @@ docker pull deepchemio/deepchem:2.3.0
Then, you create a container based on the image.

```bash
docker run -it deepchemio/deepchem:2.3.0
docker run --rm -it deepchemio/deepchem:2.3.0
```

If you want GPU support:

```bash
# If nvidia-docker is installed
nvidia-docker run -it deepchemio/deepchem:2.3.0
docker run --runtime nvidia -it deepchemio/deepchem:2.3.0
nvidia-docker run --rm -it deepchemio/deepchem:2.3.0
docker run --runtime nvidia --rm -it deepchemio/deepchem:2.3.0

# If nvidia-container-toolkit is installed
docker run --gpus all -it deepchemio/deepchem:2.3.0
docker run --gpus all --rm -it deepchemio/deepchem:2.3.0
```

You are now in a docker container whose python has deepchem installed.
You are now in a docker container which deepchem was installed. You can start playing with it in the command line.

```bash
# you can start playing with it in the command line
python
import deepchem as dc
```
(deepchem) root@xxxxxxxxxxxxx:~/mydir# python
Python 3.6.10 |Anaconda, Inc.| (default, May  8 2020, 02:54:21)
[GCC 7.3.0] on linux
Type "help", "copyright", "credits" or "license" for more information.
>>> import deepchem as dc
```

# you can run our tox21 benchmark
cd /deepchem/examples
python benchmark.py -d tox21
If you want to check the tox21 benchmark:

```bash
(deepchem) root@xxxxxxxxxxxxx:~/mydir# wget https://raw.githubusercontent.com/deepchem/deepchem/master/examples/benchmark.py
(deepchem) root@xxxxxxxxxxxxx:~/mydir# python benchmark.py -d tox21 -m graphconv -s random
```

## FAQ and Troubleshooting
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FROM nvidia/cuda:10.1-cudnn7-devel
FROM nvidia/cuda:10.0-cudnn7-devel

# Install some utilities
RUN apt-get update && \
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@@ -69,33 +69,37 @@ Then, you create a container based on the image.

.. code-block:: bash

    docker run -it deepchemio/deepchem:2.3.0
    docker run --rm -it deepchemio/deepchem:2.3.0

If you want GPU support:

.. code-block:: bash

    # If nvidia-docker is installed
    nvidia-docker run -it deepchemio/deepchem:2.3.0
    docker run --runtime nvidia -it deepchemio/deepchem:2.3.0
    nvidia-docker run --rm -it deepchemio/deepchem:2.3.0
    docker run --runtime nvidia --rm -it deepchemio/deepchem:2.3.0

    # If nvidia-container-toolkit is installed
    docker run --gpus all -it deepchemio/deepchem:2.3.0
    docker run --gpus all --rm -it deepchemio/deepchem:2.3.0

You are now in a docker container whose python has deepchem installed.
You are now in a docker container which deepchem was installed.
You can start playing with it in the command line.

.. code-block:: bash

    # you can start playing with it in the command line
    (deepchem) root@xxxxxxxxxxx:~/mydir# python
    (deepchem) root@xxxxxxxxxxxxx:~/mydir# python
    Python 3.6.10 |Anaconda, Inc.| (default, May  8 2020, 02:54:21)
    [GCC 7.3.0] on linux
    Type "help", "copyright", "credits" or "license" for more information.
    >>> import deepchem as dc

If you want to check the tox21 benchmark:

.. code-block:: bash

    # you can run our tox21 benchmark
    (deepchem) root@xxxxxxxxxxx:~/mydir# cd /deepchem/examples
    (deepchem) root@xxxxxxxxxxx:/deepchem/examples# python benchmark.py -d tox21
    (deepchem) root@xxxxxxxxxxxxx:~/mydir# wget https://raw.githubusercontent.com/deepchem/deepchem/master/examples/benchmark.py
    (deepchem) root@xxxxxxxxxxxxx:~/mydir# python benchmark.py -d tox21 -m graphconv -s random


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