:bug: fix bug (8b6e06e7) · Commits · 钟慕尧 / deepchem

README.md

+4 −18

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		@@ -42,24 +42,10 @@ DeepChem currently supports Python 3.5 through 3.7 and requires these packages o

		### Soft Requirements

		DeepChem has a number of "soft" requirements. These are packages which are needed for various submodules of DeepChem but not for the package as a whole.

		- [BioPython](https://biopython.org/wiki/Documentation)
		- [OpenAI Gym](https://gym.openai.com/)
		- [matminer](https://hackingmaterials.lbl.gov/matminer/)
		- [MDTraj](http://mdtraj.org/)
		- [NetworkX](https://networkx.github.io/documentation/stable/index.html)
		- [OpenMM](http://openmm.org/)
		- [PDBFixer](https://github.com/pandegroup/pdbfixer)
		- [Pillow](https://pypi.org/project/Pillow/)
		- [pyGPGO](https://pygpgo.readthedocs.io/en/latest/)
		- [Pymatgen](https://pymatgen.org/)
		- [PyTorch](https://pytorch.org/)
		- [RDKit](http://www.rdkit.org/docs/Install.html)
		- [simdna](https://github.com/kundajelab/simdna)
		- [XGBoost](https://xgboost.readthedocs.io/en/latest/)
		- [Weights & Biases](https://docs.wandb.com/)
		- [Tensorflow Probability](https://www.tensorflow.org/probability)
		DeepChem has a number of "soft" requirements.
		If you face `ImportError: No module named XXXX`, you may need to install some packages.

		Please check [the documents](https://deepchem.readthedocs.io/en/latest/requirements.html##soft-requirements) about the details of soft requirements.

		## Installation

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		@@ -435,7 +435,7 @@ def _cosine_dist(x, y):


		class AttnLSTMEmbedding(tf.keras.layers.Layer):
		"""Implements AttnLSTM as in matching networks paper [1]_, [2]_.
		"""Implements AttnLSTM as in matching networks paper.

		The AttnLSTM embedding adjusts two sets of vectors, the "test" and
		"support" sets. The "support" consists of a set of evidence vectors.

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		@@ -34,7 +34,7 @@ DeepChem has a number of "soft" requirements.
		\| \| \| \|
		\| \| \| \|
		+--------------------------------+---------------+---------------------------------------------------+
		\| `matminer`_ \| 1.77 \| :code:`dc.feat.materials_featurizers` \|
		\| `matminer`_ \| 0.6.3 \| :code:`dc.feat.materials_featurizers` \|
		\| \| \| \|
		\| \| \| \|
		+--------------------------------+---------------+---------------------------------------------------+
		@@ -74,6 +74,10 @@ DeepChem has a number of "soft" requirements.
		\| \| \| (we recommend you to instal) \|
		\| \| \| \|
		+--------------------------------+---------------+---------------------------------------------------+
		\| `simdna`_ \| 0.4.3.2 \| :code:`dc.metrics.genomic_metrics`, \|
		\| \| \| :code:`dc.molnet.dnasim` \|
		\| \| \| \|
		+--------------------------------+---------------+---------------------------------------------------+
		\| `Tensorflow Probability`_ \| 0.10 \| :code:`dc.rl` \|
		\| \| \| \|
		\| \| \| \|

Original line number	Diff line number	Diff line
		@@ -34,7 +34,7 @@ DeepChem has a number of "soft" requirements.
		\| \| \| \|
		\| \| \| \|
		+--------------------------------+---------------+---------------------------------------------------+
		\| `matminer`_ \| 1.77 \| :code:`dc.feat.materials_featurizers` \|
		\| `matminer`_ \| 0.6.3 \| :code:`dc.feat.materials_featurizers` \|
		\| \| \| \|
		\| \| \| \|
		+--------------------------------+---------------+---------------------------------------------------+
		@@ -74,6 +74,10 @@ DeepChem has a number of "soft" requirements.
		\| \| \| (we recommend you to instal) \|
		\| \| \| \|
		+--------------------------------+---------------+---------------------------------------------------+
		\| `simdna`_ \| 0.4.3.2 \| :code:`dc.metrics.genomic_metrics`, \|
		\| \| \| :code:`dc.molnet.dnasim` \|
		\| \| \| \|
		+--------------------------------+---------------+---------------------------------------------------+
		\| `Tensorflow Probability`_ \| 0.10 \| :code:`dc.rl` \|
		\| \| \| \|
		\| \| \| \|