CR comments + pin keras=1.1.1

sudo: required

dist: trusty

install:

- if [[ "$TRAVIS_PYTHON_VERSION" == "2.7" ]]; then wget https://repo.continuum.io/archive/Anaconda2-4.2.0-Linux-x86_64.sh

  -O anaconda.sh; else wget https://repo.continuum.io/archive/Anaconda3-4.2.0-Linux-x86_64.sh

- if [[ "$TRAVIS_PYTHON_VERSION" == "2.7" ]]; then wget https://repo.continuum.io/archive/Anaconda2-4.3.0-Linux-x86_64.sh

  -O anaconda.sh; else wget https://repo.continuum.io/archive/Anaconda3-4.3.0-Linux-x86_64.sh

  -O anaconda.sh; fi

- bash anaconda.sh -b -p $HOME/anaconda

- export PATH="$HOME/anaconda/bin:$PATH"

- source activate deepchem

- pip install yapf==0.16.0

- python setup.py install

- KERAS_BACKEND=tensorflow

script:

- nosetests -v deepchem --nologcapture

- find ./deepchem | grep .py$ |xargs python -m doctest -v

class TensorflowMoleculeEncoder(Model):

  """

  Transform molecules from one hot encoding into a latent vector

  representation.

  https://arxiv.org/abs/1610.02415

  """

  def __init__(self,

               model_dir=None,

               weights_file="model.h5",

class TensorflowMoleculeDecoder(Model):

  """

  Transform molecules from a latent space feature vector into

  a one hot encoding.

  https://arxiv.org/abs/1610.02415

  """

  def __init__(self,

               model_dir=None,

               weights_file="model.h5",

conda install -y -c omnia mdtraj

conda install -y scikit-learn

conda install -y setuptools

conda install -y keras

conda install -y -c anaconda keras=1.1.1

conda install -y -c conda-forge protobuf=3.1.0

yes | pip install $tensorflow==0.12.1

yes | pip install nose