Changes (5d34c722) · Commits · 钟慕尧 / deepchem

deepchem/molnet/tests/test_dnasim.py→deepchem/applications/genomics/tests/test_dnasim.py

+7 −5

Original line number	Diff line number	Diff line
		@@ -17,7 +17,7 @@ class TestDNASim(unittest.TestCase):
		"num_neg": 30,
		"GC_fraction": 0.4
		}
		sequences, y, embed = dc.molnet.simulate_motif_density_localization(
		sequences, y, embed = dc.applications.genomics.simulate_motif_density_localization(
		**params)
		assert sequences.shape == (60,)
		assert y.shape == (60, 1)
		@@ -33,7 +33,8 @@ class TestDNASim(unittest.TestCase):
		"num_neg": 30,
		"GC_fraction": 0.4
		}
		sequences, y, embed = dc.molnet.simulate_motif_counting(**params)
		sequences, y, embed = dc.applications.genomics.simulate_motif_counting(
		**params)
		assert sequences.shape == (60,)
		assert y.shape == (60, 1)

		@@ -45,7 +46,7 @@ class TestDNASim(unittest.TestCase):
		"num_seqs": 30,
		"GC_fraction": 0.4
		}
		sequences, embed = dc.molnet.simple_motif_embedding(**params)
		sequences, embed = dc.applications.genomics.simple_motif_embedding(**params)
		assert sequences.shape == (30,)

		def test_motif_density(self):
		@@ -58,7 +59,7 @@ class TestDNASim(unittest.TestCase):
		"max_counts": 4,
		"GC_fraction": 0.4
		}
		sequences, embed = dc.molnet.motif_density(**params)
		sequences, embed = dc.applications.genomics.motif_density(**params)
		assert sequences.shape == (30,)

		def test_single_motif_detection(self):
		@@ -70,6 +71,7 @@ class TestDNASim(unittest.TestCase):
		"num_neg": 30,
		"GC_fraction": 0.4
		}
		sequences, y, embed = dc.molnet.simulate_single_motif_detection(**params)
		sequences, y, embed = dc.applications.genomics.simulate_single_motif_detection(
		**params)
		assert sequences.shape == (60,)
		assert y.shape == (60, 1)

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