Trying to debug missing path issue

    hydrogenate_and_compute_partial_charges(

        protein_pdb_file, "pdb", tempdir, protein_hyd_file, protein_pdbqt_file)

    print("os.listdir(tempdir)")

    print(os.listdir(tempdir))

    mol_pdb_obj = PDB()

    mol_pdb_obj.load_from_files(mol_pdb_file, mol_pdbqt_file)

sudo apt-get update

wget http://repo.continuum.io/archive/Anaconda2-2.4.1-Linux-x86_64.sh -O anaconda.sh;

bash anaconda.sh -b -p $HOME/anaconda

export PATH="$HOME/anaconda/bin:$PATH"

hash -r

conda config --set always_yes yes

conda config --add channels http://conda.binstar.org/omnia