Loading deepchem/data/tests/test_fasta_loader.py +0 −11 Original line number Diff line number Diff line Loading @@ -50,15 +50,4 @@ class TestFASTALoader(unittest.TestCase): assert sequences.X.shape def test_fasta_legacy_soft_fail(self): protein = ['A', 'B', 'C', 'D', 'E', 'F', 'G', 'H', 'I', 'J', 'K', 'L', 'M', 'N', 'O', 'P', 'Q', 'R', 'S', 'T', 'U', 'V', 'W', 'X', 'Y', 'Z', '*', '-'] input_file = os.path.join(self.current_dir, "../../data/tests/uniprot_truncated.fasta") loader = dc.data.FASTALoader(OneHotFeaturizer(charset=protein, max_length=1000)) sequences = loader.create_dataset(input_file) assert sequences.X.shape # TODO: test with full uniprot file once sharding support is added. Loading
deepchem/data/tests/test_fasta_loader.py +0 −11 Original line number Diff line number Diff line Loading @@ -50,15 +50,4 @@ class TestFASTALoader(unittest.TestCase): assert sequences.X.shape def test_fasta_legacy_soft_fail(self): protein = ['A', 'B', 'C', 'D', 'E', 'F', 'G', 'H', 'I', 'J', 'K', 'L', 'M', 'N', 'O', 'P', 'Q', 'R', 'S', 'T', 'U', 'V', 'W', 'X', 'Y', 'Z', '*', '-'] input_file = os.path.join(self.current_dir, "../../data/tests/uniprot_truncated.fasta") loader = dc.data.FASTALoader(OneHotFeaturizer(charset=protein, max_length=1000)) sequences = loader.create_dataset(input_file) assert sequences.X.shape # TODO: test with full uniprot file once sharding support is added.
