Commit 215fbb3f authored by nd-02110114's avatar nd-02110114
Browse files

add flake8

parent 868677b5
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@@ -39,7 +39,8 @@ script:
  - pytest --cov=deepchem deepchem
  - bash devtools/run_doctest.sh
  - mypy -p deepchem
  - bash devtools/run_format_code.sh
  - bash devtools/run_flake8.sh
  - bash devtools/run_yapf.sh
  - bash devtools/run_docs_build.sh

after_success:
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# flake8: noqa
from deepchem.hyper.base_classes import HyperparamOpt
from deepchem.hyper.grid_search import GridHyperparamOpt
from deepchem.hyper.gaussian_process import GaussianProcessHyperparamOpt
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"""
Contains class for gaussian process hyperparameter optimizations.
"""
import os
import logging
import numpy as np
import tempfile
import os
import deepchem
from deepchem.hyper.base_classes import HyperparamOpt
from deepchem.utils.evaluate import Evaluator
from deepchem.hyper.base_classes import _convert_hyperparam_dict_to_filename

logger = logging.getLogger(__name__)
@@ -286,7 +283,6 @@ class GaussianProcessHyperparamOpt(HyperparamOpt):

    ########################

    import pyGPGO
    from pyGPGO.covfunc import matern32
    from pyGPGO.acquisition import Acquisition
    from pyGPGO.surrogates.GaussianProcess import GaussianProcess
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@@ -5,7 +5,6 @@ These tests fails every so often. I think it's when the Gaussian
process optimizer doesn't find an optimal point. This is still a
valuable test suite so leaving it in despite the flakiness.
"""
import os
import numpy as np
import sklearn
import deepchem as dc
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"""
Tests for hyperparam optimization.
"""
import os
import unittest
import tempfile
import shutil
import numpy as np
import tensorflow as tf
import deepchem as dc
import sklearn
from sklearn.ensemble import RandomForestClassifier
from sklearn.ensemble import RandomForestRegressor


class TestGridHyperparamOpt(unittest.TestCase):
@@ -137,7 +132,6 @@ class TestGridHyperparamOpt(unittest.TestCase):
            n_features=3,
            dropouts=[0.],
            weight_init_stddevs=[np.sqrt(6) / np.sqrt(1000)],
            #learning_rate=0.003, **p))
            **p))

    params_dict = {"learning_rate": [0.003, 0.03], "batch_size": [10, 50]}
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