Commit 06373908 authored by Bharath Ramsundar's avatar Bharath Ramsundar
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docs/deepchem.rst

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.. _modules:

Modules
=======


Subpackages
-----------

.. toctree::

    deepchem.models
    deepchem.scripts
    deepchem.utils
    deepchem.featurizers

Module contents
---------------

.. automodule:: deepchem
    :members:
    :undoc-members:
    :show-inheritance:

docs/deepchem.utils.rst

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deepchem.utils package
======================

Subpackages
-----------

.. toctree::

    deepchem.utils.test

Submodules
----------

deepchem.utils.conformers module
--------------------------------

.. automodule:: deepchem.utils.conformers
    :members:
    :undoc-members:
    :show-inheritance:

deepchem.utils.dataset module
-----------------------------

.. automodule:: deepchem.utils.dataset
    :members:
    :undoc-members:
    :show-inheritance:

deepchem.utils.evaluate module
------------------------------

.. automodule:: deepchem.utils.evaluate
    :members:
    :undoc-members:
    :show-inheritance:

deepchem.utils.save module
--------------------------

.. automodule:: deepchem.utils.save
    :members:
    :undoc-members:
    :show-inheritance:


Module contents
---------------

.. automodule:: deepchem.utils
    :members:
    :undoc-members:
    :show-inheritance:

docs/deepchem.utils.test.rst

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deepchem.utils.test package
===========================

Submodules
----------

deepchem.utils.test.test_vector_api module
------------------------------------------

.. automodule:: deepchem.utils.test.test_vector_api
    :members:
    :undoc-members:
    :show-inheritance:


Module contents
---------------

.. automodule:: deepchem.utils.test
    :members:
    :undoc-members:
    :show-inheritance:
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Featurization
=============

Data Featurization
------------------

Most machine learning algorithms require that input data form vectors.
However, input data for drug-discovery datasets routinely come in the
format of lists of molecules and associated experimental readouts. To
transform lists of molecules into vectors, we need to use the ``deechem``
featurization class ``DataFeaturizer``. Instances of this class must be
passed a ``Featurizer`` object. ``deepchem`` provides a number of
different subclasses of ``Featurizer`` for convenience:

Featurizers.

.. autosummary::