Commit fd784860 authored by Richard Berger's avatar Richard Berger
Browse files

First batch of spelling fixes in manual

parent 49e83b43
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+2 −2
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@@ -476,7 +476,7 @@ IMPORTANT NOTE: the angletype option has one additional affect, namely
  since they will not be SHAKEn but neither will the angle force by computed
for style region, a coeff of INF means + or - infinity (all the way 
  to the boundary)
an atom can be assigned to multiple constraints, the contraints will be
an atom can be assigned to multiple constraints, the constraints will be
  applied in the reverse order they are assigned to that atom
  (e.g. each timestep, the last fix assigned to an atom will be applied 
  to it first, then the next-to-last applied second, etc)
@@ -1263,7 +1263,7 @@ when using constraints with the minimizer, fixes are
  applied when atoms move except for the following
fixes associated with temperature control are not allowed
  (rescale, hoover/drag, langevin)
the minimizer does not invoke the "fix style shake" contraints on
the minimizer does not invoke the "fix style shake" constraints on
  bond lengths
the minimizer does not invoke pressure control or volume control settings
for good convergence, should specify use of smooth nonbond force fields 
+1 −1
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@@ -167,7 +167,7 @@ tool on the small-system data file.</P>
<P>
(6) flow</P>
<P>
2-d flow of Lennard-Jones atoms in a channel using various contraint 
2-d flow of Lennard-Jones atoms in a channel using various constraint
options.</P>
<P>
(7) polymer</P>
+1 −1
Original line number Diff line number Diff line
@@ -294,7 +294,7 @@ assign a group of atoms to a particular constraint
use appropriate number of coeffs for a particular style
the constraint itself is defined by the &quot;fix style&quot; command
multiple groups of atoms can be assigned to the same constraint
an atom can be assigned to multiple constraints, the contraints will be
an atom can be assigned to multiple constraints, the constraints will be
  applied in the reverse order they are assigned to that atom
  (e.g. each timestep, the last fix assigned to an atom will be applied 
  to it first, then the next-to-last applied second, etc)
+16 −16
Original line number Diff line number Diff line
@@ -574,11 +574,11 @@ group of atoms correctly. :dd

{Bad quadratic solve for particle/line collision} :dt

This is an internal error.  It should nornally not occur. :dd
This is an internal error.  It should normally not occur. :dd

{Bad quadratic solve for particle/tri collision} :dt

This is an internal error.  It should nornally not occur. :dd
This is an internal error.  It should normally not occur. :dd

{Bad real space Coulomb cutoff in fix tune/kspace} :dt

@@ -912,7 +912,7 @@ Atoms can not be added afterwards to this fix option. :dd

{Cannot append atoms to a triclinic box} :dt

The simulation box must be defined with edges alligned with the
The simulation box must be defined with edges aligned with the
Cartesian axes. :dd

{Cannot balance in z dimension for 2d simulation} :dt
@@ -1327,7 +1327,7 @@ Self-explanatory. :dd

This file is created when you use some LAMMPS features, to indicate
what paper you should cite on behalf of those who implemented
the feature.  Check that you have write priveleges into the directory
the feature.  Check that you have write privileges into the directory
you are running in. :dd

{Cannot open log.lammps for writing} :dt
@@ -2088,7 +2088,7 @@ Self-explanatory. :dd

{Cannot use lines with fix srd unless overlap is set} :dt

This is because line segements are connected to each other. :dd
This is because line segments are connected to each other. :dd

{Cannot use multiple fix wall commands with pair brownian} :dt

@@ -2790,7 +2790,7 @@ Self-explanatory. :dd

{Compute erotate/asphere requires extended particles} :dt

This compute cannot be used with point paritlces. :dd
This compute cannot be used with point particles. :dd

{Compute erotate/rigid with non-rigid fix-ID} :dt

@@ -3079,7 +3079,7 @@ Self-explanatory. :dd

{Compute temp/asphere requires extended particles} :dt

This compute cannot be used with point paritlces. :dd
This compute cannot be used with point particles. :dd

{Compute temp/body requires atom style body} :dt

@@ -3524,12 +3524,12 @@ path and name are correct. :dd

{Could not process Python file} :dt

The Python code in the specified file was not run sucessfully by
The Python code in the specified file was not run successfully by
Python, probably due to errors in the Python code. :dd

{Could not process Python string} :dt

The Python code in the here string was not run sucessfully by Python,
The Python code in the here string was not run successfully by Python,
probably due to errors in the Python code. :dd

{Coulomb PPPMDisp order has been reduced below minorder} :dt
@@ -4385,7 +4385,7 @@ Self-explanatory. :dd

{Fix ave/chunk does not use chunk/atom compute} :dt

The specified conpute is not for a compute chunk/atom command. :dd
The specified compute is not for a compute chunk/atom command. :dd

{Fix ave/chunk fix does not calculate a per-atom array} :dt

@@ -4970,7 +4970,7 @@ Self-explanatory. :dd

{Fix langevin angmom requires extended particles} :dt

This fix option cannot be used with point paritlces. :dd
This fix option cannot be used with point particles. :dd

{Fix langevin omega is not yet implemented with kokkos} :dt

@@ -7361,7 +7361,7 @@ This should not occur. Report the problem to the developers. :dd
Lost atoms are checked for each time thermo output is done.  See the
thermo_modify lost command for options.  Lost atoms usually indicate
bad dynamics, e.g. atoms have been blown far out of the simulation
box, or moved futher than one processor's sub-domain away before
box, or moved further than one processor's sub-domain away before
reneighboring. :dd

{MEAM library error %d} :dt
@@ -9166,7 +9166,7 @@ Self-explanatory. :dd

{Python function evaluation failed} :dt

The Python function did not run succesfully and/or did not return a
The Python function did not run successfully and/or did not return a
value (if it is supposed to return a value).  This is probably due to
some error condition in the function. :dd

@@ -10654,7 +10654,7 @@ Only atom-style variables can be used. :dd

{Variable for region cylinder is invalid style} :dt

Only equal-style varaibles are allowed. :dd
Only equal-style variables are allowed. :dd

{Variable for region is invalid style} :dt

@@ -10666,7 +10666,7 @@ Self-explanatory. :dd

{Variable for region sphere is invalid style} :dt

Only equal-style varaibles are allowed. :dd
Only equal-style variables are allowed. :dd

{Variable for restart is invalid style} :dt

@@ -11414,7 +11414,7 @@ The command options you have used caused atoms to be lost. :dd
Lost atoms are checked for each time thermo output is done.  See the
thermo_modify lost command for options.  Lost atoms usually indicate
bad dynamics, e.g. atoms have been blown far out of the simulation
box, or moved futher than one processor's sub-domain away before
box, or moved further than one processor's sub-domain away before
reneighboring. :dd

{MSM mesh too small, increasing to 2 points in each direction} :dt
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@@ -140,7 +140,7 @@ for more details.
The 6 moments of inertia (ixx,iyy,izz,ixy,ixz,iyz) should be the
values consistent with the current orientation of the rigid body
around its center of mass.  The values are with respect to the
simulation box XYZ axes, not with respect to the prinicpal axes of the
simulation box XYZ axes, not with respect to the principal axes of the
rigid body itself.  LAMMPS performs the latter calculation internally.
The coordinates of each sub-particle are specified as its x,y,z
displacement from the center-of-mass of the body particle.  The
@@ -218,7 +218,7 @@ wish; see the "read_data"_read_data.html command for more details.
The 6 moments of inertia (ixx,iyy,izz,ixy,ixz,iyz) should be the
values consistent with the current orientation of the rigid body
around its center of mass.  The values are with respect to the
simulation box XYZ axes, not with respect to the prinicpal axes of the
simulation box XYZ axes, not with respect to the principal axes of the
rigid body itself.  LAMMPS performs the latter calculation internally.
The coordinates of each vertex are specified as its x,y,z displacement
from the center-of-mass of the body particle.  The center-of-mass
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