Commit ecfe5c83 authored by Axel Kohlmeyer's avatar Axel Kohlmeyer
Browse files

use american spelling of neighbor consistently in docs and code comments

parent 009666d9
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+1 −1
Original line number Diff line number Diff line
@@ -154,7 +154,7 @@ Note: The temperature thermostating the core-Drude particle pairs
should be chosen low enough, so as to mimic as closely as possible the
self-consistent minimization. It must however be high enough, so that
the dipoles can follow the local electric field exerted by the
neighbouring atoms. The optimal value probably depends on the
neighboring atoms. The optimal value probably depends on the
temperature of the centers of mass and on the mass of the Drude
particles.

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@@ -38,7 +38,7 @@ This shift is achieved by the last term in the equation for {Vij} above.
This potential is intended for interactions between two layers of graphene.
Therefore, to avoid interaction between layers in multi-layered materials,
each layer should have a separate atom type and interactions should only
be computed between atom types of neighbouring layers.
be computed between atom types of neighboring layers.

The parameter file (e.g. CC.KC), is intended for use with metal
"units"_units.html, with energies in meV. An additional parameter, {S},
+1 −1
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@@ -242,7 +242,7 @@ void BondOxdnaFene::coeff(int narg, char **arg)
void BondOxdnaFene::init_style()
{
  /* special bonds have to be lj = 0 1 1 and coul = 1 1 1 to exclude
     the ss excluded volume interaction between nearest neighbours   */
     the ss excluded volume interaction between nearest neighbors   */

  force->special_lj[1] = 0.0;
  force->special_lj[2] = 1.0;
+2 −2
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@@ -157,7 +157,7 @@ void PairOxdna2Coaxstk::compute(int eflag, int vflag)
  numneigh = list->numneigh;
  firstneigh = list->firstneigh;

  // loop over pair interaction neighbours of my atoms
  // loop over pair interaction neighbors of my atoms

  for (ia = 0; ia < anum; ia++) {

@@ -183,7 +183,7 @@ void PairOxdna2Coaxstk::compute(int eflag, int vflag)
    for (ib = 0; ib < bnum; ib++) {

      b = blist[ib];
      factor_lj = special_lj[sbmask(b)]; // = 0 for nearest neighbours
      factor_lj = special_lj[sbmask(b)]; // = 0 for nearest neighbors
      b &= NEIGHMASK;

      btype = type[b];
+3 −3
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@@ -122,7 +122,7 @@ void PairOxdna2Dh::compute(int eflag, int vflag)
  numneigh = list->numneigh;
  firstneigh = list->firstneigh;

  // loop over pair interaction neighbours of my atoms
  // loop over pair interaction neighbors of my atoms

  for (ia = 0; ia < anum; ia++) {

@@ -145,7 +145,7 @@ void PairOxdna2Dh::compute(int eflag, int vflag)
    for (ib = 0; ib < bnum; ib++) {

      b = blist[ib];
      factor_lj = special_lj[sbmask(b)]; // = 0 for nearest neighbours
      factor_lj = special_lj[sbmask(b)]; // = 0 for nearest neighbors
      b &= NEIGHMASK;
      btype = type[b];

@@ -186,7 +186,7 @@ void PairOxdna2Dh::compute(int eflag, int vflag)

        }

        // knock out nearest-neighbour interaction between adjacent backbone sites
        // knock out nearest-neighbor interaction between adjacent backbone sites
        fpair *= factor_lj;
        evdwl *= factor_lj;

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