Unverified Commit e4ca5b18 authored by Axel Kohlmeyer's avatar Axel Kohlmeyer Committed by GitHub
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Merge pull request #1232 from akohlmey/collected-small-fixes

First chunk of collected small fixes for the stable release
parents a4d21370 cda3227b
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@@ -279,12 +279,6 @@ multibody joint). The bodies you have defined exceed this limit. :dd
This is an internal LAMMPS error.  Please report it to the
developers. :dd

{Atom sorting has bin size = 0.0} :dt

The neighbor cutoff is being used as the bin size, but it is zero.
Thus you must explicitly list a bin size in the atom_modify sort
command or turn off sorting. :dd

{Atom style hybrid cannot have hybrid as an argument} :dt

Self-explanatory. :dd
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@@ -166,7 +166,8 @@ info), a map is used. The default map style is array if no atom ID is
larger than 1 million, otherwise the default is hash.  By default, a
"first" group is not defined.  By default, sorting is enabled with a
frequency of 1000 and a binsize of 0.0, which means the neighbor
cutoff will be used to set the bin size.
cutoff will be used to set the bin size. If no neighbor cutoff is
defined, sorting will be turned off.

:line

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@@ -904,6 +904,7 @@ gcc
gcmc
gdot
GeC
gencode
georg
Georg
Germann
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@@ -31,6 +31,7 @@ struct POEMSChain{
		{
			delete childChains(i);
		}
        listOfNodes.DeleteValues();
	}
	//void printTreeStructure(int tabs);
	//void getTreeAsList(List<int> * temp);
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@@ -40,7 +40,9 @@ struct POEMSNode {
class SystemProcessor{
private:
	Tree nodes;
//	List<POEMSNode> forDeletion;
	static void POEMSNodeDelete_cb(void *node) {
		delete (POEMSNode *) node;
	}
	List<POEMSChain> headsOfSystems;
	List<List<int> > ringsInSystem;
	POEMSNode * findSingleLink(TreeNode * aNode);
@@ -65,6 +67,8 @@ public:
};

SystemProcessor::SystemProcessor(void){
  // register callback for deleting auxiliary data from tree nodes.
  nodes.SetDeleteAuxData(&POEMSNodeDelete_cb);
}

void SystemProcessor::processArray(int** links, int numLinks)
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